←Back to structures
p47
Euk-VirOryctes_rhinoceros_nudivirus
p47__YP_002321331__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321331 ↗
- Protein ID:
- p47
- Kingdom:
- euk
Quality
58.8
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-73
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.72 | 62.0 | 6.31e-01 | 93.5% | 98.3% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.70 | 58.0 | 5.50e-01 | 100.0% | 78.4% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.70 | 57.0 | 4.81e-01 | 98.4% | 53.8% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.69 | 53.0 | 4.95e-01 | 95.2% | 66.3% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.68 | 54.0 | 5.29e-01 | 88.7% | 89.6% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 54.0 | 4.99e-01 | 95.2% | 79.8% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.64 | 52.0 | 5.35e-01 | 93.5% | 100.0% |
| 1kyqA03 | 1.10.3280.10 | Mainly Alpha › Orthogonal Bundle › Siro heme synthase C-terminal domain-like › Siroheme synthase; domain 3 | 0.63 | 55.0 | 5.00e-01 | 100.0% | 78.6% |
| 2qz4A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 52.0 | 5.10e-01 | 98.4% | 87.0% |
| 1c3cA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.60 | 43.0 | 4.01e-01 | 87.1% | 60.5% |
| 3ifuA02 | 3.90.70.60 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Porcine arterivirus-type cysteine proteinase alpha domain | 0.56 | 42.0 | 3.61e-01 | 87.1% | 46.6% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.55 | 43.0 | 4.21e-01 | 90.3% | 87.5% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.55 | 42.0 | 4.11e-01 | 88.7% | 76.4% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.54 | 42.0 | 3.81e-01 | 85.5% | 97.7% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 35.0 | 3.58e-01 | 79.0% | 68.3% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 3.95e-01 | 100.0% | 66.7% |
| 1mijA00 | 1.10.10.500 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain | 0.52 | 39.0 | 3.12e-01 | 85.5% | 85.6% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 37.0 | 3.44e-01 | 83.9% | 79.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936461 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.70 | 58.0 | 5.51e-01 | 93.5% | 96.0% |
| 4947490 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.69 | 60.0 | 5.49e-01 | 100.0% | 88.2% |
| 3734334 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 57.0 | 5.14e-01 | 98.4% | 73.3% |
| 5073149 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.67 | 52.0 | 3.48e-01 | 83.9% | 26.4% |
| 4936475 | 103.4.1.31 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF30410 | 0.67 | 51.0 | 5.06e-01 | 83.9% | 90.8% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 51.0 | 5.06e-01 | 88.7% | 84.6% |
| 4669173 | 304.9.1.89 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › MLLE | 0.65 | 55.0 | 5.07e-01 | 100.0% | 74.1% |
| 4965039 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.65 | 49.0 | 3.34e-01 | 83.9% | 25.3% |
| 3932293 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.64 | 52.0 | 4.05e-01 | 90.3% | 70.0% |
| 3440951 | 387.1.1.52 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › GASA | 0.64 | 44.0 | 4.67e-01 | 90.3% | 90.0% |
| 4641045 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.62 | 50.0 | 4.16e-01 | 87.1% | 52.4% |
| 4520559 | 592.2.1.1 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 | 0.60 | 49.0 | 4.43e-01 | 96.8% | 65.9% |
| 4111666 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.60 | 50.0 | 3.63e-01 | 96.8% | 33.5% |
| 3691510 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.59 | 50.0 | 4.29e-01 | 100.0% | 75.2% |
| 3736234 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.59 | 49.0 | 4.47e-01 | 100.0% | 91.1% |
| 4149728 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.58 | 42.0 | 3.90e-01 | 77.4% | 100.0% |
| 4995195 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.58 | 41.0 | 2.89e-01 | 79.0% | 23.0% |
| 5049970 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.55 | 44.0 | 3.30e-01 | 95.2% | 66.1% |
| 3481299 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.52 | 42.0 | 4.14e-01 | 85.5% | 98.5% |
D2
medium
residues 137-247
Domain cluster:
rep: OrNV_p47-like__YP_009553389__Tomelloso_virus__2053981__D138-239
D3
medium
residues 260-324