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p48

Euk-Vir

Norovirus_GI

p48__NP_786945__Norovirus_GI__122928

Identity

Accession:: NP_786945 ↗
Protein ID:: p48
Kingdom:: euk

Quality

55.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Caliciviridae› Norovirus› Norovirus_GI

TaxID: 122928

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 318-391

PDB

D2 medium residues 176-237

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08405.16 best	Calici_PP_N	116.6	1.60e-33	88.7%	15.4%

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4xcmA02	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.74	56.0	4.40e-01	80.6%	41.5%
2k1gA00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.74	56.0	4.32e-01	82.3%	38.8%
2evrA02	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.72	56.0	4.13e-01	82.3%	41.2%
2lktA00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.69	54.0	4.35e-01	87.1%	53.6%
3k6yA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.67	54.0	4.46e-01	87.1%	87.9%
1p3cA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.65	45.0	3.82e-01	74.2%	79.1%
2xk0A00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.64	49.0	4.79e-01	98.4%	75.4%
6bhdA03	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.60	45.0	4.55e-01	82.3%	81.0%
4zgnB00	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.59	41.0	3.54e-01	74.2%	83.5%
4e1pA00	3.30.60.230	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain	0.59	30.0	3.23e-01	74.2%	52.7%
2xrcC04	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.58	50.0	3.67e-01	100.0%	86.0%
2e6zA00	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.58	42.0	4.33e-01	79.0%	84.7%
3pfsB00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.57	46.0	3.59e-01	87.1%	64.6%
1a1rA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.57	45.0	4.08e-01	87.1%	89.4%
1shyB01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.57	46.0	2.81e-01	95.2%	27.3%
4whiA00	2.40.128.600	Mainly Beta › Beta Barrel › Lipocalin ›	0.56	40.0	3.49e-01	79.0%	71.6%
2jqjA01	2.60.200.20	Mainly Beta › Sandwich › Tumour Suppressor Smad4 ›	0.54	39.0	3.20e-01	80.6%	78.5%
2i9yA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.54	41.0	3.18e-01	87.1%	73.2%
2hrvA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.53	41.0	3.71e-01	88.7%	92.6%
3dmgA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.53	36.0	2.63e-01	71.0%	62.9%
4k8wA00	2.10.109.10	Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A	0.52	42.0	3.55e-01	95.2%	87.3%
1r8oB01	2.30.30.480	Mainly Beta › Roll › SH3 type barrels. ›	0.52	35.0	3.49e-01	71.0%	68.2%
4ok4A02	2.70.98.70	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.51	40.0	2.63e-01	95.2%	71.2%
1o7dD01	2.70.98.30	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4	0.50	35.0	2.44e-01	77.4%	91.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3959495	219.1.1.8 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60	0.82	57.0	5.26e-01	82.3%	57.7%
3527284	219.1.1.25 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT	0.81	63.0	4.72e-01	83.9%	44.1%
3341084	219.1.1.25 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT	0.75	55.0	4.66e-01	77.4%	77.0%
161350	219.1.1.8 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60	0.71	55.0	4.07e-01	82.3%	40.9%
4520605	1.1.5.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin	0.70	47.0	3.78e-01	71.0%	45.4%
4029647	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.69	43.0	4.75e-01	79.0%	80.0%
5054112	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	49.0	4.84e-01	82.3%	96.9%
3784334	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.62	47.0	4.79e-01	91.9%	83.3%
3589736	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.55	39.0	3.82e-01	75.8%	70.0%
3866038	4.1.1.154 ↗	beta barrels › SH3 › SH3 › SH3 › DUF4772	0.53	47.0	4.24e-01	100.0%	88.2%
3238162	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.52	41.0	2.68e-01	91.9%	88.5%
3221112	389.1.2.1 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi	0.51	36.0	3.64e-01	75.8%	76.7%
3172856	5.1.4.575 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290	0.50	34.0	2.29e-01	71.0%	30.7%

D3 medium residues 238-313

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08405.16 best	Calici_PP_N	184.6	3.50e-54	100.0%	21.2%