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p48

Euk-Vir

Agrotis_segetum_granulovirus

p48__YP_009513116__Agrotis_segetum_granulovirus__10464

Identity

Accession:
YP_009513116 ↗
Protein ID:
p48
Kingdom:
euk

Quality

80.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Agrotis_segetum_granulovirus

TaxID: 10464

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-208
PDB
Domain cluster: rep: hypothetical_protein__YP_667882__Neodiprion_abietis_NPV__204507__D58-231
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 271.7 1.40e-80 98.1% 54.4%
D2 medium residues 219-333
PDB
Domain cluster: rep: P45__YP_003517840__Lymantria_xylina_nucleopolyhedrovirus__166921__D212-357
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 107.5 1.10e-30 100.0% 27.1%
D3 medium residues 338-388
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04878.20 best Baculo_p48 49.4 5.30e-13 100.0% 13.7%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.74 58.0 5.10e-01 90.2% 58.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.70 54.0 5.40e-01 86.3% 84.6%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 59.0 5.57e-01 94.1% 78.7%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.69 58.0 5.41e-01 94.1% 75.4%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.69 59.0 4.82e-01 96.1% 51.6%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 52.0 5.36e-01 94.1% 93.8%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 51.0 5.46e-01 88.2% 100.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 52.0 4.61e-01 94.1% 61.5%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 49.0 4.39e-01 88.2% 62.2%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.63 51.0 4.96e-01 96.1% 81.4%
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.62 50.0 3.95e-01 94.1% 41.7%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.62 50.0 5.08e-01 96.1% 96.1%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 50.0 4.44e-01 94.1% 65.4%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 50.0 4.87e-01 94.1% 85.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.58 47.0 4.56e-01 96.1% 84.5%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.58 45.0 4.70e-01 94.1% 100.0%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 37.0 3.47e-01 80.4% 100.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5007583 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.82 61.0 3.90e-01 80.4% 19.6%
1877692 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.79 59.0 6.07e-01 80.4% 91.7%
3501367 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 58.0 5.05e-01 82.4% 57.0%
4003051 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.76 57.0 5.24e-01 80.4% 69.2%
3588971 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.75 56.0 4.92e-01 80.4% 60.0%
4547274 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.73 56.0 4.57e-01 86.3% 46.0%
3814803 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.73 60.0 5.17e-01 92.2% 58.7%
185993 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.70 54.0 5.15e-01 86.3% 72.1%
4683095 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.68 56.0 4.92e-01 94.1% 62.5%
3580283 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 61.0 5.12e-01 100.0% 62.4%
4951933 3567.1.1.190 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › HisKA 0.68 57.0 5.11e-01 100.0% 66.7%
5077460 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 58.0 5.28e-01 98.0% 73.5%
3966580 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.65 46.0 4.51e-01 80.4% 88.3%
4826095 5067.1.1.5 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.65 53.0 4.45e-01 94.1% 59.1%
4932248 5076.2.1.3 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 0.64 54.0 3.66e-01 100.0% 47.5%
3952510 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 50.0 4.49e-01 92.2% 64.0%
3575178 616.1.1.30 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Neur_chan_memb 0.58 46.0 4.21e-01 96.1% 90.7%