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p54
Euk-VirCarrot_yellow_leaf_virus
p54__YP_003075969__Carrot_yellow_leaf_virus__656190
Identity
- Accession:
- YP_003075969 ↗
- Protein ID:
- p54
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Carrot_yellow_leaf_virus
TaxID: 656190
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-92
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 44.0 | 3.69e-01 | 100.0% | 87.7% |
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.50 | 43.0 | 3.93e-01 | 100.0% | 71.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603146 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.59 | 40.0 | 2.77e-01 | 71.2% | 25.3% |
| 3238968 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 26.0 | 3.15e-01 | 98.8% | 77.8% |
| 4969036 | 187.1.1.4 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_17 | 0.51 | 35.0 | 2.82e-01 | 71.2% | 51.9% |
D2
high
residues 121-168
Domain cluster:
rep: CPh__YP_009162625__Tobacco_virus_1__1692045__D140-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 31.1 | 1.30e-07 | 100.0% | 6.6% |
D3
high
residues 188-324
Domain cluster:
rep: HSP90__YP_009553249__Blackcurrant_leafroll-associated_virus_1__2292426__D184-302
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 69.4 | 3.40e-19 | 100.0% | 25.2% |
D4
high
residues 334-470
Domain cluster:
rep: p64__YP_008858534__Carnation_yellow_fleck_virus__940280__D331-495
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 99.9 | 1.80e-28 | 100.0% | 27.2% |