←Back to structures
p59
Euk-VirBeet_pseudoyellows_virus
p59__NP_940790__Beet_pseudoyellows_virus__72750
Identity
- Accession:
- NP_940790 ↗
- Protein ID:
- p59
- Kingdom:
- euk
Quality
78.5
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Beet_pseudoyellows_virus
TaxID: 72750
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-123
Domain cluster:
rep: p60_gene_product__YP_004901690__Grapevine_leafroll-associated_virus_5__71032__D10-123
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 127.0 | 1.10e-36 | 96.7% | 22.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.54 | 39.0 | 4.04e-01 | 90.2% | 82.0% |
| 8a5eD01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 34.0 | 4.00e-01 | 96.7% | 100.0% |
| 2f7vA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 38.0 | 3.09e-01 | 77.9% | 72.2% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 36.0 | 2.75e-01 | 75.4% | 39.6% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998727 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.53 | 27.0 | 2.83e-01 | 75.4% | 51.3% |
D2
high
residues 130-177
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 61.2 | 1.00e-16 | 100.0% | 9.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 56.0 | 3.35e-01 | 79.2% | 12.1% |
| 1miwA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.69 | 55.0 | 5.08e-01 | 91.7% | 95.3% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 55.0 | 4.69e-01 | 97.9% | 100.0% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.65 | 46.0 | 3.47e-01 | 77.1% | 36.4% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.65 | 55.0 | 3.96e-01 | 97.9% | 75.7% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.61 | 45.0 | 3.89e-01 | 83.3% | 50.6% |
| 3k9dA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 42.0 | 2.69e-01 | 87.5% | 72.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964377 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.72 | 63.0 | 4.41e-01 | 100.0% | 72.9% |
| 3502691 | 131.2.1.4 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 | 0.69 | 54.0 | 3.47e-01 | 91.7% | 22.3% |
| 3416433 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 50.0 | 4.12e-01 | 89.6% | 73.7% |
| 3601491 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 42.0 | 2.57e-01 | 83.3% | 15.3% |
| 3239173 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.51 | 39.0 | 4.00e-01 | 91.7% | 100.0% |
| 4978104 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 37.0 | 2.72e-01 | 81.2% | 33.3% |
D3
high
residues 202-314
Domain cluster:
rep: unnamed_protein_product__YP_003002360__Lettuce_chlorosis_virus__642478__D200-321
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 127.7 | 7.20e-37 | 100.0% | 22.1% |
D4
medium
residues 315-329_343-454
Domain cluster:
rep: Hsp90__YP_010086803__Pistachio_ampelovirus_A__2093224__D326-483
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 126.9 | 1.30e-36 | 99.2% | 23.2% |
D5
medium
residues 455-517
Domain cluster:
rep: p61__YP_009506348__Cordyline_virus_1__937809__D457-519
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 84.9 | 6.60e-24 | 96.8% | 11.9% |