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p5

Euk-Vir

Emaravirus_rosae

p5__YP_009380546__Emaravirus_rosae__1980433

Identity

Accession:: YP_009380546 ↗
Protein ID:: p5
Kingdom:: euk

Quality

66.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_rosae

TaxID: 1980433

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 329-459

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21705.4 best	p55_CTD	110.6	5.70e-32	57.2%	93.8%

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vm9A02	6.10.140.2110	Special › Helix non-globular › Helix Hairpins ›	0.70	31.0	4.63e-01	87.8%	96.5%
1k04A02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.63	38.0	4.23e-01	94.7%	75.0%
2odvA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	39.0	4.21e-01	90.1%	75.9%
1w0bA01	1.20.58.420	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP	0.60	34.0	4.02e-01	93.1%	80.4%
4a17U01	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	30.0	3.81e-01	93.1%	80.5%
8hdlA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.59	41.0	3.40e-01	70.2%	99.6%
2rdcA00	1.10.287.800	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242	0.58	33.0	3.33e-01	87.8%	54.9%
1wfdA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.57	29.0	3.37e-01	93.9%	66.7%
3f0cA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	40.0	3.96e-01	100.0%	67.4%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.56	31.0	3.70e-01	96.9%	78.0%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.56	29.0	3.39e-01	94.7%	68.0%
3ppbA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	39.0	3.49e-01	100.0%	50.0%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.56	32.0	3.84e-01	89.3%	83.3%
1rv2D04	1.10.287.690	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain	0.56	30.0	3.92e-01	89.3%	97.1%
2khmA01	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.56	30.0	3.29e-01	86.3%	62.0%
1m6nA04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.55	37.0	3.67e-01	96.2%	65.2%
2xseA00	1.20.120.1440	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain	0.55	35.0	3.29e-01	88.5%	51.6%
2iaiA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	39.0	3.94e-01	100.0%	73.5%
2nr9A00	1.20.1540.10	Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like	0.53	39.0	3.44e-01	76.3%	97.4%
7c1iA01	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.52	38.0	4.33e-01	88.5%	100.0%
1yq3C02	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.52	34.0	3.75e-01	84.0%	81.5%
3ejnA03	1.20.120.840	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain	0.52	32.0	3.41e-01	100.0%	70.3%
2w9zA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	39.0	3.96e-01	83.2%	79.7%
6fmhB01	1.10.3160.10	Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1	0.51	42.0	3.90e-01	100.0%	69.8%
1f5qB02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.50	37.0	3.71e-01	83.2%	73.9%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3632302	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.74	35.0	4.36e-01	82.4%	72.5%
3253074	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.65	41.0	4.32e-01	100.0%	69.2%
3398929	5041.1.1.32 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141	0.61	36.0	4.22e-01	86.3%	83.3%
3677894	101.1.10.1 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N	0.61	34.0	4.29e-01	96.9%	94.7%
3204908	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	34.0	3.00e-01	93.1%	37.9%
3432743	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.60	39.0	4.37e-01	88.5%	85.0%
3997912	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.60	34.0	3.65e-01	98.5%	62.6%
3278037	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.59	38.0	3.28e-01	95.4%	42.6%
3282638	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.58	37.0	3.68e-01	95.4%	61.5%
3681859	5069.1.3.54 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Per1	0.58	32.0	3.27e-01	86.3%	54.4%
4928781	2004.1.1.156 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5	0.58	41.0	3.03e-01	74.0%	84.6%
4959475	3352.1.1.2 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2	0.55	43.0	3.06e-01	80.9%	43.0%
3560659	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.55	44.0	3.42e-01	87.8%	79.9%
4077051	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.54	40.0	3.17e-01	78.6%	70.3%
3211633	188.1.1.1 ↗	alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep	0.54	43.0	3.43e-01	88.5%	81.0%
4308857	589.1.2.1 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C	0.53	41.0	3.55e-01	85.5%	53.5%
3257764	192.29.1.171 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sas10_Utp3	0.53	33.0	3.48e-01	95.4%	70.4%
4247	5081.1.1.1 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid	0.52	38.0	3.41e-01	75.6%	97.9%
4541059	589.1.2.1 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C	0.52	39.0	3.50e-01	85.5%	56.0%
4964083	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.52	38.0	4.09e-01	87.8%	89.1%
5012620	1075.5.1.4 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt	0.52	40.0	3.41e-01	80.9%	93.0%
4946046	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.52	37.0	2.71e-01	74.8%	49.3%
3694268	5069.1.3.1 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt	0.52	35.0	3.47e-01	84.0%	65.0%
3170443	5050.1.1.4 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran	0.51	44.0	3.64e-01	93.9%	84.3%
5001436	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.50	38.0	3.37e-01	80.2%	94.0%
4196658	1175.1.1.1 ↗	alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › LNT_N	0.50	41.0	3.66e-01	87.8%	65.9%

D2 medium residues 1-192

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gsvA00	6.10.140.40	Special › Helix non-globular › Helix Hairpins ›	0.55	20.0	3.42e-01	93.2%	97.0%
1ugoA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.51	23.0	3.08e-01	95.8%	77.8%
7vyjB01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.50	30.0	3.05e-01	98.4%	59.7%

D3 medium residues 193-302

PDB