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p61
Euk-VirCordyline_virus_1
p61__YP_009506348__Cordyline_virus_1__937809
Identity
- Accession:
- YP_009506348 ↗
- Protein ID:
- p61
- Kingdom:
- euk
Quality
72.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Velarivirus›
Cordyline_virus_1
TaxID: 937809
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-118
Domain cluster:
rep: p60_gene_product__YP_004901690__Grapevine_leafroll-associated_virus_5__71032__D10-123
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vyiA00 | 1.20.120.820 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain | 0.58 | 41.0 | 4.24e-01 | 93.1% | 76.6% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 35.0 | 3.35e-01 | 88.8% | 51.5% |
| 4p6bB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 3.11e-01 | 92.2% | 78.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2863102 | 4069.1.1.0 ↗ | alpha arrays › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain › Phosphoprotein C-terminal domain | 0.59 | 42.0 | 4.37e-01 | 93.1% | 79.6% |
| 3743527 | 327.19.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C | 0.57 | 37.0 | 4.09e-01 | 76.7% | 83.3% |
| 3993412 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.55 | 34.0 | 3.03e-01 | 90.5% | 42.4% |
| 4297945 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.52 | 23.0 | 3.17e-01 | 74.1% | 83.6% |
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 30.0 | 3.55e-01 | 75.0% | 83.7% |
| 3947139 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.51 | 38.0 | 2.83e-01 | 80.2% | 75.0% |
| 4968231 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.51 | 42.0 | 2.91e-01 | 88.8% | 28.9% |
D2
high
residues 183-305
D3
medium
residues 308-456
Domain cluster:
rep: CP__YP_009162627__Tobacco_virus_1__1692045__D32-141
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 55.1 | 7.00e-15 | 99.3% | 24.6% |
| PF01785.23 | Closter_coat | 25.5 | 1.10e-05 | 83.2% | 54.0% |
D4
medium
residues 457-519
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 50.0 | 2.50e-13 | 95.2% | 10.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.71 | 57.0 | 4.50e-01 | 90.5% | 97.1% |
| 1aueB00 | 1.20.120.150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain | 0.59 | 49.0 | 4.32e-01 | 93.7% | 62.8% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 49.0 | 4.73e-01 | 95.2% | 88.9% |
| 1dliA03 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 36.0 | 3.29e-01 | 76.2% | 94.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990109 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.64 | 57.0 | 4.64e-01 | 95.2% | 89.9% |
| 4200968 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 52.0 | 4.69e-01 | 93.7% | 77.6% |
| 5081179 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 43.0 | 2.74e-01 | 76.2% | 45.7% |
| 3592519 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.59 | 47.0 | 3.42e-01 | 88.9% | 36.3% |
| 4961926 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.57 | 47.0 | 3.43e-01 | 98.4% | 70.0% |
| 3878696 | 2004.1.1.149 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD | 0.57 | 49.0 | 2.86e-01 | 100.0% | 18.0% |
| 5030934 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 52.0 | 3.33e-01 | 100.0% | 33.8% |