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p6

Euk-Vir

Diodia_vein_chlorosis_virus

p6__YP_009507954__Diodia_vein_chlorosis_virus__656520

Identity

Accession:
YP_009507954 ↗
Protein ID:
p6
Kingdom:
euk

Quality

72.3 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Diodia_vein_chlorosis_virus

TaxID: 656520

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-52
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D04 3.30.1920.40 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.60 47.0 4.44e-01 93.9% 85.9%
5r4qA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 48.0 3.29e-01 100.0% 68.4%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.57 35.0 3.60e-01 100.0% 63.8%
4ewcA01 2.20.25.560 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 31.0 3.10e-01 100.0% 49.1%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 45.0 3.35e-01 100.0% 80.1%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 42.0 3.30e-01 85.7% 83.0%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 41.0 3.17e-01 100.0% 86.0%
3i9xA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 39.0 2.98e-01 100.0% 76.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017081 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.71 58.0 3.67e-01 95.9% 25.2%
3471761 221.4.1.9 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.61 49.0 3.46e-01 100.0% 75.8%
5078594 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.60 48.0 3.63e-01 91.8% 96.2%
3649757 221.4.1.8 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 0.58 49.0 3.31e-01 100.0% 66.3%
3495693 70.3.1.2 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › zf-MYND 0.57 37.0 2.61e-01 75.5% 17.9%
3936226 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 46.0 3.15e-01 100.0% 64.5%
1289944 221.4.1.8 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 0.56 47.0 3.17e-01 100.0% 62.9%
144305 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 45.0 3.34e-01 100.0% 79.6%
3626342 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 46.0 3.43e-01 100.0% 84.1%
5074099 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 44.0 3.29e-01 100.0% 75.2%
4242756 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 31.0 2.03e-01 93.9% 11.0%
5071733 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.52 40.0 3.36e-01 87.8% 74.4%
3963568 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 2.68e-01 100.0% 40.4%
3965019 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.51 44.0 2.91e-01 100.0% 86.4%
5052835 205.1.1.21 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 0.51 44.0 2.79e-01 100.0% 75.7%
135831 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 39.0 2.98e-01 100.0% 76.4%