←Back to structures

p74_protein

Euk-Vir

Oryctes_rhinoceros_nudivirus

p74_protein__YP_002321437__Oryctes_rhinoceros_nudivirus__92521

Identity

Accession:: YP_002321437 ↗
Protein ID:: p74_protein
Kingdom:: euk

Quality

68.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Oryctes_rhinoceros_nudivirus

TaxID: 92521

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-201_245-270_548-566

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08404.16 best	Baculo_p74_N	42.6	6.20e-11	87.6%	43.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929586	4184.1.1.0 ↗	beta barrels › MFPT repeat › MFPT repeat › MFPT repeat	0.54	16.0	2.81e-01	82.5%	80.0%

D2 high residues 415-536

PDB

D3 high residues 647-722

PDB

Domain cluster: rep: ACH96256.1_p74_protein-like_protein__YP_009345930__Kallithea_virus__1654582__D647-719

D4 medium residues 1-14_275-290_310-346_583-645

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04583.18 best	Baculo_p74	52.8	5.70e-14	95.4%	26.5%

D5 medium residues 15-68

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08404.16 best	Baculo_p74_N	25.9	7.40e-06	100.0%	15.0%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qg7B01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.64	41.0	3.36e-01	87.0%	35.6%
3dghA03	3.30.390.30	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain	0.60	48.0	3.89e-01	100.0%	43.5%
2rrnA01	3.30.70.2040	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	44.0	3.89e-01	98.1%	54.2%
2b4vA02	3.30.460.50	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 ›	0.56	40.0	3.23e-01	100.0%	35.3%
4zrlA01	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.55	42.0	3.34e-01	100.0%	39.3%
3k59A07	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.54	41.0	3.17e-01	88.9%	79.6%
3cjiB00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	42.0	2.86e-01	96.3%	72.7%
4oagB02	3.30.460.90	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 ›	0.52	45.0	3.13e-01	98.1%	80.6%
2nvmA00	3.30.310.110	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like	0.52	43.0	3.51e-01	100.0%	49.0%
1ksiA02	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	39.0	3.36e-01	88.9%	49.0%
2qdfA02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.50	41.0	3.72e-01	100.0%	92.8%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4545557	3343.1.1.2 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal	0.66	51.0	2.89e-01	87.0%	10.7%
3816149	263.1.1.0 ↗	a+b three layers › SRF-like › SRF-like › SRF-like	0.65	47.0	4.23e-01	92.6%	55.1%
3618640	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.64	47.0	2.83e-01	79.6%	12.9%
3484074	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.62	47.0	3.55e-01	85.2%	75.7%
3229118	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.58	46.0	2.97e-01	85.2%	82.5%
3411215	109.4.1.1158 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO11	0.58	46.0	2.83e-01	88.9%	14.6%
3581366	74.1.1.0 ↗	beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain	0.57	41.0	2.41e-01	75.9%	19.4%
3741246	3343.1.1.1 ↗	alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal	0.57	50.0	2.86e-01	100.0%	18.3%
4101307	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.57	43.0	2.33e-01	88.9%	4.4%
4121961	3561.1.1.1 ↗	a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17	0.55	48.0	2.84e-01	100.0%	14.3%
3477564	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.55	45.0	2.65e-01	100.0%	11.0%
5044086	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.55	43.0	3.19e-01	90.7%	38.7%
4387576	304.5.1.1 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II	0.54	44.0	3.68e-01	98.1%	49.5%
3945698	283.2.1.10 ↗	a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29514	0.53	43.0	3.55e-01	100.0%	48.1%
3320299	304.28.1.16 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA	0.52	43.0	3.53e-01	100.0%	53.0%
3484322	922.1.1.0 ↗	few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat	0.52	34.0	3.56e-01	74.1%	74.0%
5049397	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.52	44.0	2.82e-01	100.0%	20.0%
3928583	304.55.2.0 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like	0.52	42.0	3.34e-01	100.0%	65.4%
3797447	896.1.1.0 ↗	a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related	0.50	39.0	3.47e-01	98.1%	65.3%
3494851	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	41.0	3.59e-01	98.1%	78.9%
3523019	221.1.1.4 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1	0.50	40.0	3.55e-01	94.4%	94.1%