p87

Euk-Vir

Honeysuckle_ringspot_virus

p87__YP_004191789__Honeysuckle_ringspot_virus__943272

Identity

78.6 mean pLDDT

Orthornavirae› Kitrinoviricota› Tolucaviricetes› Tolivirales› Tombusviridae› Alphacarmovirus› Honeysuckle_ringspot_virus

TaxID: 943272

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 615-740

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	107.0	1.50e-30	100.0%	26.1%

D2 medium residues 89-206

PDB

Domain cluster: rep: P1__YP_009552849__Apple_luteovirus_1__2170544__D293-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08500.17 best	Tombus_P33	34.4	3.70e-08	78.0%	54.1%

D3 medium residues 249-327_390-413

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	46.4	3.50e-12	62.1%	12.3%

D4 medium residues 328-389_414-442_496-523

PDB

Domain cluster: rep: replicase__YP_002333476__Soybean_yellow_mottle_mosaic_virus__578361__D327-366_395-422_476-495

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	42.3	5.90e-11	53.8%	12.8%
PF00998.29	RdRP_3	31.4	1.20e-07	28.6%	6.6%

D5 medium residues 443-495_524-614

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	137.7	7.10e-40	63.9%	18.9%
PF00998.29	RdRP_3	82.4	4.30e-23	38.2%	10.7%