←Back to structures

pD1133L

Euk-Vir

African_swine_fever_virus

pD1133L__YP_009703376__African_swine_fever_virus__10497

Identity

Accession:: YP_009703376 ↗
Protein ID:: pD1133L
Kingdom:: euk

Quality

59.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 766-871

PDB

D2 high residues 1066-1119

PDB

D3 medium residues 66-91_338-381

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6h9dA00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.55	37.0	2.93e-01	70.0%	50.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2488339	235.1.1.6 ↗	a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme	0.55	37.0	2.93e-01	70.0%	50.0%
4096488	3291.1.1.52 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Neurensin	0.53	36.0	2.98e-01	72.9%	38.5%
4073860	5086.1.1.67 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin	0.52	35.0	2.90e-01	72.9%	37.0%

D4 medium residues 92-206_321-337

PDB

Domain cluster: rep: D1133L__YP_009704058__African_swine_fever_virus_Georgia_2007_1__874269__D95-201

D5 medium residues 207-320

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2p6rA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.77	42.0	3.46e-01	100.0%	30.9%
4xjxA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.75	37.0	3.12e-01	100.0%	28.8%
3obwA03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.65	33.0	3.52e-01	100.0%	52.9%
3wxmB03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.65	34.0	3.57e-01	98.2%	53.3%
7wd3A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.61	41.0	3.64e-01	100.0%	47.9%
2pueA03	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.54	30.0	2.79e-01	99.1%	40.1%
6c5cA01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	37.0	3.18e-01	93.0%	44.5%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.53	29.0	3.78e-01	98.2%	98.4%
2fepA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.52	29.0	2.80e-01	99.1%	42.9%
3k12D00	3.30.1330.40	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like	0.50	32.0	3.19e-01	96.5%	60.0%
3agrA01	3.30.420.530	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 ›	0.50	44.0	3.58e-01	99.1%	79.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3174160	301.1.1.2 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3	0.65	34.0	4.03e-01	98.2%	74.7%
4134870	301.1.1.2 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3	0.65	33.0	3.40e-01	100.0%	49.5%
4943578	301.1.1.0 ↗	a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like	0.60	32.0	3.46e-01	99.1%	57.0%
3402292	2007.1.2.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I	0.57	34.0	3.00e-01	81.6%	38.9%
None	—		0.54	42.0	2.75e-01	84.2%	41.0%
3660836	207.1.1.95 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14	0.54	32.0	2.15e-01	98.2%	13.5%
1879148	2007.1.2.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor	0.54	30.0	2.37e-01	99.1%	23.3%
3943166	2007.1.2.2 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1	0.53	30.0	2.83e-01	99.1%	42.1%
4333146	4143.1.1.1 ↗	a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP	0.53	33.0	3.44e-01	90.4%	64.5%

D6 medium residues 382-410_520-689

PDB

Domain cluster: rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00271.38 best	Helicase_C	40.5	4.00e-10	50.7%	64.5%

D7 medium residues 411-519

PDB