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pDNA_terminal_protein

Euk-Vir

Odocoileus_adenovirus_1

pDNA_terminal_protein__YP_009414576__Odocoileus_adenovirus_1__78522

Identity

Accession:
YP_009414576 ↗
Protein ID:
pDNA_terminal_protein
Kingdom:
euk

Quality

70.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Barthadenovirus› Odocoileus_adenovirus_1

TaxID: 78522

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-125_572-598
PDB
Domain cluster: rep: pTP__YP_009051655__Lizard_adenovirus_2__874272__D3-127_576-605
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 94.7 7.60e-27 60.0% 14.4%
D2 medium residues 126-179_417-469
PDB
D3 medium residues 195-331_375-416
PDB
D4 medium residues 470-571
PDB
Domain cluster: rep: pTP__YP_009328903__Simian_mastadenovirus_WIV19__1923976__D482-502_533-587
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 113.6 1.40e-32 100.0% 18.2%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.76 38.0 4.75e-01 97.1% 79.0%
2wzpP03 2.60.120.880 Mainly Beta › Sandwich › Jelly Rolls › 0.66 48.0 4.45e-01 94.1% 60.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 40.0 3.99e-01 97.1% 58.7%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.64 44.0 4.63e-01 70.6% 92.1%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.64 41.0 3.29e-01 98.0% 32.8%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 32.0 3.54e-01 93.1% 59.5%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.63 40.0 3.07e-01 99.0% 29.3%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 37.0 3.72e-01 100.0% 56.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 3.80e-01 97.1% 57.8%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 29.0 3.11e-01 99.0% 48.9%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.60 34.0 3.04e-01 95.1% 38.9%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.40e-01 98.0% 55.0%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.56 40.0 4.08e-01 75.5% 92.2%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.56 37.0 3.17e-01 100.0% 40.7%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 33.0 3.65e-01 72.5% 76.3%
3tavA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 44.0 3.35e-01 88.2% 70.1%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 4.34e-01 78.4% 95.1%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 4.28e-01 94.1% 84.7%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.53 38.0 3.21e-01 74.5% 88.6%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 34.0 3.26e-01 98.0% 55.8%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.53 37.0 3.42e-01 71.6% 97.7%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 29.0 3.21e-01 97.1% 67.1%
2w4lB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 34.0 2.97e-01 93.1% 44.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058098 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 40.0 4.19e-01 98.0% 57.9%
4972971 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 42.0 4.31e-01 96.1% 59.0%
3240764 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.73 40.0 3.65e-01 98.0% 41.5%
5039154 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 32.0 3.45e-01 98.0% 50.0%
4938024 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.69 38.0 3.65e-01 98.0% 45.8%
3604576 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 39.0 4.05e-01 99.0% 62.1%
1222010 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.63 32.0 3.50e-01 93.1% 58.0%
3596679 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 39.0 3.42e-01 98.0% 45.2%
5043686 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.85e-01 89.2% 75.0%
3257385 5050.1.1.23 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › CLN3 0.57 48.0 3.94e-01 92.2% 90.0%
3603165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 3.54e-01 100.0% 56.5%
3065880 3019.1.1.4 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › GbpA_2 0.56 45.0 4.48e-01 100.0% 83.2%
4937420 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 38.0 2.49e-01 70.6% 33.3%
3363261 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.55 41.0 3.75e-01 77.5% 94.1%
3790425 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 47.0 3.97e-01 97.1% 57.0%
3580592 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.54 40.0 3.25e-01 98.0% 39.9%
3493644 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 40.0 3.40e-01 98.0% 49.7%
4029586 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 38.0 3.35e-01 97.1% 52.0%
3915206 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 40.0 3.30e-01 98.0% 46.9%
3583317 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 47.0 3.95e-01 97.1% 61.2%
3870735 601.25.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C 0.52 38.0 3.64e-01 79.4% 80.0%
3652038 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 30.0 3.27e-01 93.1% 67.1%
3333290 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 40.0 3.29e-01 99.0% 47.2%
None — 0.50 42.0 3.38e-01 98.0% 75.3%