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pIIIa
Euk-VirDuck_adenovirus_2
pIIIa__YP_009047158__Duck_adenovirus_2__1520006
Identity
- Accession:
- YP_009047158 ↗
- Protein ID:
- pIIIa
- Kingdom:
- euk
Quality
64.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Duck_adenovirus_2
TaxID: 1520006
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 130-295
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02455.22 best | Hex_IIIa | 267.8 | 2.80e-79 | 100.0% | 32.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.65 | 18.0 | 3.61e-01 | 76.5% | 100.0% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.57 | 19.0 | 3.02e-01 | 91.6% | 75.4% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.56 | 26.0 | 3.58e-01 | 84.9% | 89.5% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.54 | 34.0 | 4.18e-01 | 89.8% | 100.0% |
| 7ct3A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.53 | 28.0 | 3.26e-01 | 83.7% | 70.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4864637 | 7008.1.1.1 ↗ | alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.98 | 76.0 | 8.48e-01 | 79.5% | 97.0% |
| 2643578 | 7009.1.1.1 ↗ | alpha bundles › Middle domain of hexon-associated protein (IIIa) › Middle domain of hexon-associated protein (IIIa) › Middle domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.93 | 73.0 | 8.05e-01 | 80.1% | 96.4% |
| 4823693 | 7008.1.1.1 ↗ | alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.89 | 70.0 | 7.50e-01 | 92.8% | 91.8% |
| 2387853 | 7009.1.1.1 ↗ | alpha bundles › Middle domain of hexon-associated protein (IIIa) › Middle domain of hexon-associated protein (IIIa) › Middle domain of hexon-associated protein (IIIa) › Hex_IIIa | 0.84 | 69.0 | 6.90e-01 | 84.9% | 95.9% |
| 3740759 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.61 | 24.0 | 3.97e-01 | 94.6% | 100.0% |
| 3357726 | 386.1.1.207 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 | 0.61 | 27.0 | 3.87e-01 | 99.4% | 89.3% |
| 3604511 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 19.0 | 3.39e-01 | 73.5% | 96.4% |
| 1171964 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.55 | 22.0 | 3.50e-01 | 91.6% | 100.0% |
| 5083698 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.55 | 22.0 | 3.35e-01 | 83.7% | 90.8% |
| 5014159 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 35.0 | 3.96e-01 | 88.0% | 85.6% |
| 3462493 | 109.2.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth | 0.53 | 38.0 | 3.98e-01 | 97.6% | 80.4% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 22.0 | 3.48e-01 | 88.6% | 100.0% |
| 5000498 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.52 | 18.0 | 2.78e-01 | 76.5% | 75.0% |
| 5014319 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 21.0 | 3.26e-01 | 77.1% | 91.2% |
| 5014686 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.51 | 19.0 | 3.13e-01 | 88.6% | 98.2% |
D2
high
residues 310-390
Domain cluster:
rep: pIIIa__NP_077392__Bovine_atadenovirus_D__130499__D257-346
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02455.22 best | Hex_IIIa | 103.2 | 2.30e-29 | 100.0% | 15.0% |
D3
medium
residues 14-51
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dk5A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.76 | 62.0 | 5.25e-01 | 100.0% | 57.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 44.0 | 3.86e-01 | 100.0% | 48.3% |
| 4dooA02 | 1.10.890.20 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › | 0.54 | 43.0 | 4.01e-01 | 100.0% | 98.1% |
| 6mfvC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 2.59e-01 | 97.4% | 21.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368363 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.74 | 60.0 | 4.88e-01 | 100.0% | 50.0% |
| 3666216 | 564.1.1.9 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RVE6 | 0.65 | 54.0 | 5.09e-01 | 100.0% | 77.8% |
| 4367294 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.65 | 49.0 | 4.40e-01 | 100.0% | 59.3% |
| 4147837 | 192.1.1.41 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › Val_tRNA-synt_C | 0.65 | 48.0 | 4.11e-01 | 100.0% | 49.2% |
| 4373203 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.64 | 48.0 | 4.10e-01 | 100.0% | 49.2% |
| 4975222 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.61 | 52.0 | 3.27e-01 | 97.4% | 18.5% |
| 4000043 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.60 | 47.0 | 4.18e-01 | 100.0% | 75.4% |
| 3990109 | 2484.1.1.102 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 | 0.58 | 40.0 | 2.81e-01 | 76.3% | 20.7% |
| 3796589 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.55 | 40.0 | 3.13e-01 | 84.2% | 59.0% |
D4
medium
residues 58-113