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pIIIa

Euk-Vir

red_squirrel_adenovirus_1

pIIIa__YP_009389493__red_squirrel_adenovirus_1__2773314

Identity

Accession:: YP_009389493 ↗
Protein ID:: pIIIa
Kingdom:: euk

Quality

65.3 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› red_squirrel_adenovirus_1

TaxID: 2773314

Cluster

View cluster (34 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-262

PDB

Domain cluster: rep: pIIIa__YP_007347001__Bovine_adenovirus_6__111167__D107-214

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	95.5	4.90e-27	100.0%	21.3%

D2 high residues 311-399

PDB

Domain cluster: rep: pIIIa__YP_009272878__Bat_mastadenovirus_WIV12__1788434__D354-418

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	58.5	7.90e-16	100.0%	15.8%

D3 medium residues 21-127

PDB

Domain cluster: rep: capsid_protein_precursor_pIIIa__YP_009310432__Pigeon_adenovirus_2__1907767__D4-107

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	41.6	1.00e-10	56.1%	9.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6cgvM01	1.20.120.1500	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa	0.65	58.0	5.41e-01	98.1%	79.1%
7m2wE01	1.20.120.1900	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain	0.55	49.0	3.57e-01	100.0%	60.6%
1x04A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.52	36.0	2.98e-01	70.1%	88.5%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4864636	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.79	60.0	6.29e-01	83.2%	85.6%
4823692	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.68	60.0	5.60e-01	97.2%	78.9%
2643579	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.62	55.0	5.36e-01	93.5%	87.2%
3196270	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.57	40.0	3.91e-01	71.0%	99.1%
3382641	611.9.1.4 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N	0.56	39.0	3.87e-01	70.1%	80.9%
4042981	4953.1.1.4 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2	0.56	39.0	4.28e-01	86.9%	89.4%
3505189	109.4.1.594 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C	0.56	41.0	3.20e-01	76.6%	68.7%
3479713	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	36.0	3.46e-01	71.0%	89.2%
4001581	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	39.0	3.43e-01	80.4%	83.6%
4936633	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.51	36.0	2.97e-01	74.8%	98.5%

D4 medium residues 267-297

PDB