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pMGF_505-1R

Euk-Vir

African_swine_fever_virus

pMGF_505-1R__YP_009702268__African_swine_fever_virus__10497

Identity

Accession:
YP_009702268 ↗
Protein ID:
pMGF_505-1R
Kingdom:
euk

Quality

82.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (52 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-12_14-111
PDB
Domain cluster: rep: hypothetical_protein_IM014_gp057__YP_009927147__African_swine_fever_virus__10497__D5-104
D2 medium residues 315-373
PDB
Domain cluster: rep: pMGF_505-1R__YP_009703252__African_swine_fever_virus__10497__D309-372
D3 medium residues 374-458
PDB
Domain cluster: rep: MGF_505-9R__YP_009703982__African_swine_fever_virus_Georgia_2007_1__874269__D358-433
D4 medium residues 459-531
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 61.0 5.61e-01 91.8% 95.8%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.72 61.0 5.32e-01 95.9% 87.5%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.71 54.0 4.45e-01 79.5% 63.2%
2aw6A02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 61.0 4.37e-01 100.0% 40.3%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 50.0 5.02e-01 78.1% 82.7%
3uarA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 57.0 5.12e-01 97.3% 85.0%
8ai9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 57.0 5.17e-01 97.3% 82.7%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.68 48.0 4.94e-01 79.5% 79.4%
4ptsB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 58.0 4.46e-01 100.0% 62.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 49.0 4.01e-01 80.8% 66.7%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 50.0 4.04e-01 82.2% 72.8%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.66 43.0 4.98e-01 75.3% 98.0%
4ri6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 56.0 4.85e-01 100.0% 93.3%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 57.0 4.85e-01 100.0% 67.2%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 46.0 3.76e-01 80.8% 67.5%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 46.0 3.80e-01 80.8% 69.5%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 4.73e-01 91.8% 78.9%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 46.0 3.78e-01 80.8% 66.4%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 46.0 3.87e-01 82.2% 68.7%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.61 50.0 4.86e-01 91.8% 97.5%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.60 45.0 4.68e-01 84.9% 88.1%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.60 46.0 4.73e-01 84.9% 90.0%
3tdoA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.58 46.0 3.22e-01 90.4% 94.6%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 44.0 4.41e-01 86.3% 85.1%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.54 38.0 3.57e-01 72.6% 71.9%
3ljxA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 44.0 3.26e-01 98.6% 79.8%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 40.0 4.14e-01 84.9% 88.1%
1ygpA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 43.0 2.85e-01 97.3% 52.5%
3pfoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 40.0 2.65e-01 83.6% 88.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490044 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.78 55.0 4.51e-01 74.0% 70.8%
5079318 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 68.0 4.61e-01 100.0% 32.5%
3341109 109.4.1.167 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rif1_N 0.76 67.0 4.01e-01 100.0% 25.4%
4022938 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 3.62e-01 100.0% 11.5%
3603102 109.4.1.623 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.71 63.0 5.30e-01 100.0% 67.2%
3567333 109.4.1.2006 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, PF29896 0.70 61.0 3.54e-01 100.0% 13.7%
3577473 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 59.0 5.02e-01 100.0% 58.5%
4016105 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.69 56.0 5.24e-01 89.0% 82.2%
3470401 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 61.0 4.89e-01 100.0% 69.0%
3886883 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 59.0 4.62e-01 100.0% 54.2%
5059586 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.68 45.0 4.38e-01 71.2% 62.0%
3327406 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 57.0 4.78e-01 98.6% 67.7%
51166 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.66 50.0 4.03e-01 82.2% 72.3%
3279 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.65 48.0 3.93e-01 80.8% 69.9%
3496385 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 56.0 4.30e-01 98.6% 53.9%
4933597 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.59 46.0 3.90e-01 89.0% 95.6%
3234964 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.55 40.0 3.61e-01 80.8% 92.7%
3614722 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.50 43.0 3.09e-01 97.3% 79.1%