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pTP

Euk-Vir

Bovine_atadenovirus_D

pTP__NP_077390__Bovine_atadenovirus_D__130499

Identity

Accession:
NP_077390 ↗
Protein ID:
pTP
Kingdom:
euk

Quality

69.9 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Barthadenovirus› Bovine_atadenovirus_D

TaxID: 130499

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-127_573-598
PDB
Domain cluster: rep: pTP__YP_009051655__Lizard_adenovirus_2__874272__D3-127_576-605
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 96.1 2.80e-27 59.6% 13.9%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 28.0 3.63e-01 78.8% 89.0%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 26.0 3.33e-01 77.5% 82.1%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.51 20.0 3.05e-01 80.8% 94.3%
D2 medium residues 128-164_467-491_547-572
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 35.7 5.60e-09 43.2% 6.6%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.96e-01 95.5% 54.9%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.58 53.0 4.52e-01 98.9% 96.4%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.55 51.0 4.29e-01 100.0% 70.7%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 48.0 4.28e-01 98.9% 93.5%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.80e-01 96.6% 55.3%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 47.0 4.30e-01 100.0% 99.2%
4w6yA00 2.60.120.1210 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.06e-01 100.0% 64.4%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 46.0 4.50e-01 96.6% 100.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 46.0 4.33e-01 96.6% 94.5%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.52 47.0 3.48e-01 98.9% 52.3%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.52 35.0 2.74e-01 95.5% 35.3%
7mjrA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.51 45.0 3.49e-01 98.9% 100.0%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 3.54e-01 96.6% 65.1%
1pmhX00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 45.0 3.51e-01 96.6% 59.6%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 45.0 3.88e-01 97.7% 68.4%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 39.0 3.55e-01 97.7% 61.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3876166 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 54.0 4.51e-01 96.6% 73.6%
3915206 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 53.0 4.18e-01 96.6% 70.3%
3333290 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 53.0 4.12e-01 96.6% 81.1%
3589228 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 52.0 4.10e-01 96.6% 54.9%
5041163 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 46.0 4.30e-01 97.7% 69.5%
3597620 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 47.0 3.93e-01 98.9% 50.7%
3364460 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 54.0 4.45e-01 98.9% 77.9%
4103741 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.57 48.0 4.51e-01 100.0% 75.2%
3486965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 3.74e-01 97.7% 49.3%
4243265 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.56 47.0 3.79e-01 98.9% 49.4%
4963992 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 51.0 4.38e-01 100.0% 85.2%
5048738 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 4.27e-01 96.6% 88.7%
3934954 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 45.0 2.94e-01 92.0% 39.2%
3933402 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 42.0 3.89e-01 97.7% 65.2%
3580624 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 44.0 3.55e-01 92.0% 83.3%
4927390 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.24e-01 96.6% 70.0%
3822933 207.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.53 47.0 2.86e-01 94.3% 20.0%
4483890 10.32.1.170 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sec-ASP3 0.53 49.0 4.00e-01 97.7% 58.7%
4033011 10.32.1.170 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sec-ASP3 0.53 48.0 4.08e-01 98.9% 63.6%
4624792 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.52 41.0 3.81e-01 100.0% 66.1%
3419007 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 42.0 3.86e-01 95.5% 67.0%
3994924 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.51 39.0 3.27e-01 80.7% 64.0%
4974405 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 37.0 3.73e-01 87.5% 74.4%
4972971 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 4.39e-01 95.5% 94.0%
4964937 821.1.1.15 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.51 34.0 3.72e-01 90.9% 84.3%
5078060 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 46.0 4.21e-01 96.6% 86.4%
D3 medium residues 208-335_375-410
PDB
D4 medium residues 411-466_492-546
PDB
Domain cluster: rep: pre-terminal_protein__YP_009272876__Bat_mastadenovirus_WIV12__1788434__D126-197_452-483_541-562
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 65.8 4.20e-18 53.1% 10.2%
PF02459.21 Adeno_terminal 42.4 5.20e-11 51.3% 9.7%