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pTP
Euk-VirTurkey_adenovirus_1
pTP__YP_003933582__Turkey_adenovirus_1__878329
Identity
- Accession:
- YP_003933582 ↗
- Protein ID:
- pTP
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Turkey_adenovirus_1
TaxID: 878329
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 222-378_434-464
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02459.21 best | Adeno_terminal | 88.1 | 7.50e-25 | 85.6% | 22.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xqoA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 35.0 | 4.01e-01 | 94.1% | 91.1% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.53 | 33.0 | 4.07e-01 | 95.2% | 100.0% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.53 | 23.0 | 3.11e-01 | 76.1% | 78.0% |
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.52 | 34.0 | 3.65e-01 | 99.5% | 74.5% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 33.0 | 3.79e-01 | 98.4% | 88.5% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 32.0 | 3.38e-01 | 96.3% | 69.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059668 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.68 | 23.0 | 3.07e-01 | 97.9% | 53.3% |
| 4979261 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.64 | 27.0 | 2.81e-01 | 98.4% | 40.4% |
| 3392851 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 36.0 | 3.54e-01 | 97.3% | 67.0% |
D2
medium
residues 11-125
Domain cluster:
rep: pre-terminal_protein__YP_009508601__Psittacine_aviadenovirus_B__2169709__D38-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02459.21 best | Adeno_terminal | 95.5 | 4.10e-27 | 59.1% | 12.6% |
D3
medium
residues 126-141_465-630
Domain cluster:
rep: pre-terminal_protein__YP_009272876__Bat_mastadenovirus_WIV12__1788434__D126-197_452-483_541-562
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02459.21 best | Adeno_terminal | 248.0 | 2.60e-73 | 91.8% | 29.7% |