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pTP

Euk-Vir

Simian_adenovirus_8

pTP__YP_009174941__Simian_adenovirus_8__413258

Identity

Accession:: YP_009174941 ↗
Protein ID:: pTP
Kingdom:: euk

Quality

70.9 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Simian_adenovirus_8

TaxID: 413258

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 14-106_606-648

PDB

Domain cluster: rep: pTP__YP_009051655__Lizard_adenovirus_2__874272__D3-127_576-605

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	84.9	6.70e-24	50.7%	11.3%

D2 medium residues 107-169_476-605

PDB

Domain cluster: rep: DNA_terminal_protein_pTP__YP_005271183__bat_adenovirus_3__2758098__D124-193_404-566

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	195.3	2.40e-57	68.9%	24.1%
PF02459.21	Adeno_terminal	79.9	2.30e-22	33.2%	11.7%

D3 medium residues 223-296_325-363_411-438

PDB

D4 medium residues 297-324_439-475

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	44.0	1.70e-11	96.9%	6.9%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1v9vA01	1.20.1480.20	Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like	0.73	65.0	5.68e-01	100.0%	66.3%
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.63	49.0	4.64e-01	100.0%	70.5%
1kf6D00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.58	49.0	4.11e-01	100.0%	85.7%
2b5dX02	1.20.1430.10	Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain	0.57	51.0	4.22e-01	100.0%	73.7%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.56	40.0	3.36e-01	75.4%	60.0%
4y9jA01	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.56	47.0	3.64e-01	93.8%	59.7%
3pasA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	47.0	3.47e-01	100.0%	50.0%
2p0tA02	1.10.60.30	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains	0.55	40.0	3.93e-01	100.0%	72.2%
6nmnA02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.55	45.0	3.78e-01	100.0%	54.7%
2e2eA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	38.0	3.01e-01	76.9%	43.7%
2chnB03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.53	44.0	3.22e-01	93.8%	67.8%
4q5rA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	39.0	3.27e-01	83.1%	56.2%
3pubA01	1.10.10.2400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	0.51	36.0	3.46e-01	73.8%	89.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3506950	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.64	46.0	4.08e-01	75.4%	54.4%
5071514	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.62	42.0	4.00e-01	73.8%	60.0%
4965834	605.4.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein	0.57	49.0	4.54e-01	98.5%	85.9%
4944098	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.56	48.0	4.28e-01	100.0%	72.0%
3279231	191.1.1.1 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1	0.54	37.0	2.92e-01	70.8%	55.6%
5038800	3579.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Oxidored_q3	0.52	43.0	3.45e-01	92.3%	46.9%
3305682	109.4.1.1170 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_27	0.50	36.0	3.20e-01	80.0%	87.6%
4550964	3843.1.1.28 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD	0.50	44.0	4.13e-01	100.0%	78.5%