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pTP

Euk-Vir

Simian_mastadenovirus_WIV19

pTP__YP_009328903__Simian_mastadenovirus_WIV19__1923976

Identity

Accession:
YP_009328903 ↗
Protein ID:
pTP
Kingdom:
euk

Quality

74.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› simian_adenovirus_55

TaxID: 1923976

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 225-250_268-360_393-418
PDB
Domain cluster: rep: terminal_protein_precursor_pTP__YP_002213832__Human_mastadenovirus_B__108098__D234-249_273-292_330-373_404-435
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 105.6 3.60e-30 84.8% 23.7%
D2 medium residues 456-481_503-532
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6khjH01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.73 63.0 3.86e-01 100.0% 35.4%
4di1C02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.71 49.0 5.51e-01 82.1% 100.0%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 55.0 4.60e-01 94.6% 51.5%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.67 45.0 4.69e-01 96.4% 76.5%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 54.0 4.55e-01 91.1% 52.0%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.66 57.0 4.79e-01 100.0% 79.0%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.61 53.0 4.04e-01 100.0% 46.1%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.59 44.0 4.40e-01 96.4% 84.2%
2dkwA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 45.0 3.57e-01 89.3% 38.9%
1vryA00 6.10.250.2810 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 47.0 4.61e-01 96.4% 91.8%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.54 40.0 4.23e-01 91.1% 91.8%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.53 39.0 3.58e-01 80.4% 98.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4355181 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.61 38.0 3.69e-01 82.1% 52.3%
3769450 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 2.90e-01 80.4% 50.4%
4965963 4120.1.1.97 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF502 0.53 45.0 3.63e-01 98.2% 49.5%
D3 medium residues 482-502_533-587
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02459.21 best Adeno_terminal 68.1 8.60e-19 75.0% 9.8%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 29.0 2.55e-01 98.7% 25.7%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 42.0 3.47e-01 94.7% 38.0%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.64 40.0 3.42e-01 89.5% 39.7%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 3.23e-01 88.2% 42.3%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.14e-01 86.8% 40.0%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 39.0 4.28e-01 92.1% 83.9%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 36.0 3.44e-01 89.5% 52.2%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.80e-01 93.4% 57.7%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 35.0 3.27e-01 86.8% 51.6%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.64e-01 93.4% 58.2%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.85e-01 90.8% 57.7%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 35.0 3.60e-01 82.9% 68.1%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.55 42.0 2.91e-01 92.1% 27.5%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 46.0 3.69e-01 97.4% 49.3%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.71e-01 89.5% 57.8%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.53 43.0 3.42e-01 90.8% 44.9%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.61e-01 94.7% 58.1%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.33e-01 89.5% 68.1%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 37.0 3.16e-01 88.2% 47.2%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 39.0 2.90e-01 85.5% 100.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.54e-01 93.4% 57.4%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 42.0 3.74e-01 97.4% 99.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4006675 11.1.1.156 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 0.68 38.0 3.63e-01 85.5% 47.8%
5039831 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 39.0 4.08e-01 86.8% 68.6%
4972971 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 4.26e-01 89.5% 61.0%
4990333 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.59 40.0 3.26e-01 85.5% 38.6%
4217901 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.59 43.0 3.93e-01 90.8% 59.0%
5038729 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.68e-01 89.5% 53.3%
4953107 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.79e-01 89.5% 56.7%
3629564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 47.0 3.80e-01 90.8% 75.2%
5030313 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.61e-01 90.8% 54.3%
4457400 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.56 40.0 3.56e-01 86.8% 54.3%
4111785 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.56 40.0 3.71e-01 86.8% 60.0%
4515517 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.56 40.0 3.78e-01 86.8% 63.3%
5070409 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 38.0 3.65e-01 86.8% 61.4%
4473642 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.55 41.0 3.72e-01 90.8% 59.0%
3604576 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.85e-01 93.4% 64.2%
4974405 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 40.0 3.73e-01 86.8% 63.3%
4927141 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.98e-01 92.1% 60.9%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.52 40.0 4.16e-01 81.6% 100.0%
4026461 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 3.73e-01 92.1% 57.3%
2048191 10.1.1.54 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sialidase-like_CBM 0.51 43.0 3.15e-01 92.1% 57.6%
5080000 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 41.0 3.30e-01 92.1% 45.5%