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pX

Euk-Vir

Duck_adenovirus_2

pX__YP_009047161__Duck_adenovirus_2__1520006

Identity

Accession:
YP_009047161 ↗
Protein ID:
pX
Kingdom:
euk

Quality

63.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Duck_adenovirus_2

TaxID: 1520006

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-95
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.62 43.0 3.81e-01 70.4% 61.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 35.0 2.98e-01 94.4% 36.3%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 39.0 3.07e-01 72.2% 35.7%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 2.89e-01 87.0% 67.8%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.57 40.0 2.67e-01 75.9% 32.8%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.54 43.0 4.33e-01 96.3% 92.5%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.54 39.0 2.50e-01 79.6% 55.9%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.42e-01 92.6% 80.5%
1g6sA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.53 38.0 2.68e-01 79.6% 64.7%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 43.0 3.04e-01 88.9% 86.7%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.52 43.0 3.03e-01 96.3% 94.0%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.05e-01 94.4% 82.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3650872 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.69 46.0 3.51e-01 70.4% 63.1%
3959574 3105.1.1.0 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related 0.69 52.0 4.17e-01 85.2% 61.7%
4596350 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.64 55.0 3.57e-01 96.3% 27.7%
4076504 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.62 46.0 2.81e-01 83.3% 50.6%
3612297 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.62 42.0 2.76e-01 70.4% 35.0%
3346021 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 42.0 2.86e-01 70.4% 26.8%
3482243 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.61 42.0 4.19e-01 70.4% 76.4%
3479024 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.60 41.0 4.15e-01 70.4% 76.4%
3717943 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.60 42.0 2.91e-01 81.5% 20.7%
4537675 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.59 40.0 4.03e-01 70.4% 81.8%
1204325 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.58 50.0 2.98e-01 100.0% 32.8%
4115268 4137.1.1.1 ↗ a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.58 36.0 3.35e-01 96.3% 49.3%
3187819 3736.1.1.0 ↗ alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 0.58 44.0 3.16e-01 83.3% 31.6%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 38.0 2.38e-01 70.4% 31.9%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.57 43.0 2.99e-01 79.6% 92.7%
4385503 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.55 46.0 2.99e-01 92.6% 71.0%
4677652 2004.1.1.1017 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12, UvrD_C 0.55 48.0 3.01e-01 98.1% 43.8%
3975404 4137.1.1.1 ↗ a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.54 35.0 3.25e-01 98.1% 51.4%
3497680 5054.1.1.63 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.53 42.0 2.57e-01 88.9% 38.1%
5075839 239.2.1.1 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.52 40.0 3.17e-01 88.9% 68.5%
3806449 387.1.5.17 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin_like 0.52 35.0 3.75e-01 70.4% 82.2%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 36.0 2.61e-01 75.9% 31.2%
4440301 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 34.0 3.46e-01 70.4% 80.0%
4669977 239.2.1.0 ↗ beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like 0.51 36.0 2.88e-01 75.9% 70.0%
3781302 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.50 36.0 3.18e-01 77.8% 80.0%