←Back to structures

pagr

Euk-Vir

Euproctis_pseudoconspersa_nucleopolyhedrovirus

pagr__YP_002854711__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467

Identity

Accession:: YP_002854711 ↗
Protein ID:: pagr
Kingdom:: euk

Quality

69.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Euproctis_pseudoconspersa_nucleopolyhedrovirus

TaxID: 307467

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 205-338_385-398

PDB

Domain cluster: rep: polyADP-ribose_glycohydrolase__YP_010086971__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D109-212

D2 medium residues 339-384_399-453

PDB

Domain cluster: rep: parg__YP_009133247__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929__D395-487

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u8zA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	36.0	3.03e-01	80.2%	36.4%
2bmjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	36.0	2.96e-01	81.2%	34.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3762854	2004.1.1.164 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc	0.57	38.0	2.90e-01	80.2%	30.2%
3881641	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	41.0	3.98e-01	83.2%	94.5%

D3 medium residues 454-491_504-588

PDB

Domain cluster: rep: parg__YP_009133247__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929__D488-522_535-609

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2dr3A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	42.0	3.42e-01	74.8%	32.8%
7x0hC01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.60	33.0	3.27e-01	75.6%	47.4%
3k1tA02	3.40.50.11280	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutamate-cysteine ligase, N-terminal domain	0.58	39.0	3.82e-01	100.0%	60.4%
4fr2A01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	42.0	3.63e-01	99.2%	53.3%
1o2dA01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	40.0	3.58e-01	100.0%	56.6%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3350186	7529.1.1.4 ↗	a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C	0.84	67.0	6.48e-01	91.1%	75.6%
3700612	7529.1.1.4 ↗	a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C	0.78	73.0	5.34e-01	100.0%	45.0%
3987929	2007.1.2.10 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3	0.67	37.0	3.59e-01	81.3%	47.9%
4480518	2007.1.2.10 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3	0.63	36.0	3.53e-01	75.6%	50.4%
4033581	2007.1.2.11 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4	0.58	33.0	3.31e-01	74.8%	51.5%
3184437	7534.1.1.1 ↗	a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf	0.56	41.0	3.28e-01	76.4%	40.7%
4014323	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.56	40.0	3.13e-01	74.8%	49.8%
5053470	2005.1.1.4 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase	0.55	42.0	3.03e-01	78.0%	60.3%
5036510	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.55	32.0	3.44e-01	74.8%	66.0%
3241495	2007.1.2.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I	0.54	41.0	3.49e-01	80.5%	52.2%
4996416	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.53	39.0	3.39e-01	76.4%	51.6%
3640850	7512.1.1.39 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › TreT_GT1	0.52	46.0	3.58e-01	100.0%	90.3%
4991335	2005.1.1.16 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2	0.52	37.0	3.17e-01	74.8%	92.5%
5047819	7552.1.1.1 ↗	a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase	0.52	40.0	2.77e-01	84.6%	62.6%
4329821	2007.1.2.7 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LppC	0.51	37.0	3.36e-01	75.6%	63.1%
5038196	7512.1.1.32 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4	0.51	39.0	3.35e-01	82.1%	96.5%
3744329	7516.1.1.0 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases	0.50	35.0	3.12e-01	70.7%	98.9%
3411652	7510.1.1.1 ↗	a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh	0.50	40.0	3.98e-01	95.9%	82.3%
4890443	2007.1.7.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH	0.50	38.0	3.32e-01	100.0%	50.8%