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papain-like_protease
Euk-VirDiuris_virus_B
papain-like_protease__YP_006908990__Diuris_virus_B__1247116
Identity
- Accession:
- YP_006908990 ↗
- Protein ID:
- papain-like_protease
- Kingdom:
- euk
Quality
70.5
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Divavirus›
Diuris_virus_B
TaxID: 1247116
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
rep: papain-like_protease__YP_006908995__Diuris_virus_A__1247115__D3-76
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7pl7A01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.65 | 55.0 | 4.50e-01 | 100.0% | 72.4% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 44.0 | 4.57e-01 | 100.0% | 89.4% |
| 2xcjA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 50.0 | 4.86e-01 | 100.0% | 94.0% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 41.0 | 4.35e-01 | 100.0% | 92.4% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 42.0 | 4.32e-01 | 98.6% | 92.6% |
| 3dwbA01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.53 | 39.0 | 2.68e-01 | 79.7% | 78.7% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 41.0 | 4.11e-01 | 100.0% | 83.3% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.51 | 37.0 | 3.72e-01 | 91.9% | 75.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3591055 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.59 | 44.0 | 3.98e-01 | 100.0% | 57.1% |
| 3590480 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.59 | 45.0 | 4.01e-01 | 100.0% | 58.1% |
| 431258 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.58 | 44.0 | 4.58e-01 | 100.0% | 91.0% |
| 4026045 | 101.1.4.85 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3, PF28877 | 0.56 | 39.0 | 4.18e-01 | 77.0% | 90.0% |
| 3988657 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.55 | 41.0 | 4.35e-01 | 100.0% | 93.8% |
| 3952801 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.54 | 41.0 | 3.28e-01 | 82.4% | 96.0% |
| 4173793 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.53 | 39.0 | 3.84e-01 | 79.7% | 76.2% |
| 3602378 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.53 | 36.0 | 3.79e-01 | 71.6% | 81.5% |
| 5024540 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 44.0 | 3.69e-01 | 100.0% | 94.5% |