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papainase
Euk-VirShrimp_hemocyte_iridescent_virus
papainase__YP_010084803__Shrimp_hemocyte_iridescent_virus__2039780
Identity
- Accession:
- YP_010084803 ↗
- Protein ID:
- papainase
- Kingdom:
- euk
Quality
66.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Shrimp_hemocyte_iridescent_virus
TaxID: 2039780
Cluster
View cluster (48 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 158-332_438-453
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 36.3 | 9.30e-09 | 72.8% | 43.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.72 | 65.0 | 5.22e-01 | 95.8% | 91.2% |
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 63.0 | 5.50e-01 | 96.3% | 82.0% |
| 2wbfX00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 63.0 | 5.54e-01 | 97.9% | 89.8% |
| 1jqpA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 63.0 | 5.89e-01 | 97.9% | 90.8% |
| 5egwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 59.0 | 4.66e-01 | 96.9% | 55.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3706458 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 56.0 | 5.89e-01 | 91.6% | 76.0% |
| 3426348 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 53.0 | 5.59e-01 | 87.4% | 75.3% |
| 3620332 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 70.0 | 5.58e-01 | 94.2% | 69.0% |
| 3806027 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.75 | 53.0 | 5.79e-01 | 90.6% | 85.0% |
| 4030613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.68 | 63.0 | 5.59e-01 | 97.9% | 89.8% |
| 3705335 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.66 | 61.0 | 5.43e-01 | 96.9% | 83.1% |
| 3699843 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 60.0 | 4.98e-01 | 96.3% | 63.9% |
| 3401763 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 60.0 | 5.48e-01 | 95.8% | 81.5% |
| 3676121 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.65 | 59.0 | 5.65e-01 | 94.8% | 92.1% |
| None | — | 0.65 | 60.0 | 4.90e-01 | 97.4% | 60.5% | |
| 3699969 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 58.0 | 5.07e-01 | 95.3% | 83.6% |
| 3940173 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.64 | 58.0 | 5.40e-01 | 95.3% | 83.3% |
| 3884055 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.63 | 58.0 | 5.24e-01 | 96.3% | 79.0% |
| 3813985 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.61 | 55.0 | 5.17e-01 | 93.7% | 94.2% |
| 3803752 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.61 | 55.0 | 4.89e-01 | 94.2% | 96.9% |
| 3783089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.50 | 24.0 | 2.97e-01 | 95.8% | 69.2% |
D2
medium
residues 333-437
Domain cluster:
rep: hypothetical_protein_KM759_gp141__YP_010088014__Lymphocystis_disease_virus_4__2704413__D246-336
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 47.4 | 3.70e-12 | 87.6% | 18.6% |