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parg
Euk-VirLambdina_fiscellaria_nucleopolyhedrovirus
parg__YP_009133247__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929
Identity
- Accession:
- YP_009133247 ↗
- Protein ID:
- parg
- Kingdom:
- euk
Quality
69.5
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Lambdina_fiscellaria_nucleopolyhedrovirus
TaxID: 1642929
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 187-312
D2
medium
residues 395-487
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.78 | 53.0 | 4.41e-01 | 100.0% | 41.1% |
| 5ksoA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 36.0 | 2.97e-01 | 98.9% | 38.0% |
| 3c9fA02 | 3.90.780.10 | Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain | 0.53 | 43.0 | 3.63e-01 | 90.3% | 95.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3491231 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.86 | 81.0 | 5.67e-01 | 100.0% | 38.8% |
| 2601224 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.86 | 81.0 | 5.62e-01 | 100.0% | 36.3% |
| 3833253 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.85 | 80.0 | 5.53e-01 | 100.0% | 36.3% |
| 3409212 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.84 | 79.0 | 5.41e-01 | 100.0% | 33.4% |
| 3700612 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.84 | 79.0 | 5.36e-01 | 100.0% | 41.0% |
| 3607513 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.84 | 78.0 | 5.47e-01 | 100.0% | 34.7% |
| 4002576 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.83 | 78.0 | 6.36e-01 | 100.0% | 60.6% |
| 3234469 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.83 | 78.0 | 5.32e-01 | 100.0% | 36.1% |
| 3499277 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.80 | 74.0 | 4.71e-01 | 100.0% | 23.0% |
| None | — | 0.63 | 56.0 | 3.74e-01 | 100.0% | 33.5% | |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 47.0 | 4.10e-01 | 91.4% | 88.7% |
| 3419268 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.50 | 35.0 | 2.61e-01 | 98.9% | 27.2% |
D3
medium
residues 488-522_535-609
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.71 | 43.0 | 3.78e-01 | 72.7% | 40.9% |
| 3td9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.70 | 42.0 | 3.77e-01 | 89.1% | 43.0% |
| 2wjwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 43.0 | 3.77e-01 | 88.2% | 44.8% |
| 1vjzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 51.0 | 3.58e-01 | 83.6% | 38.8% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 39.0 | 3.39e-01 | 83.6% | 38.9% |
| 1f6yA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.59 | 42.0 | 3.25e-01 | 90.0% | 31.4% |
| 1wy5A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 46.0 | 3.73e-01 | 88.2% | 85.3% |
| 1xngA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 48.0 | 3.66e-01 | 91.8% | 69.2% |
| 3rqtA02 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.56 | 39.0 | 3.14e-01 | 70.9% | 55.9% |
| 2wmfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 45.0 | 3.17e-01 | 88.2% | 33.0% |
| 3zs6A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 37.0 | 2.98e-01 | 70.0% | 57.6% |
| 1o2dA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 3.68e-01 | 100.0% | 53.8% |
| 4gl8A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 37.0 | 3.01e-01 | 70.0% | 56.9% |
| 4rk2A00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 38.0 | 2.69e-01 | 76.4% | 62.8% |
| 4pfyA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.52 | 36.0 | 2.87e-01 | 70.9% | 57.7% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 44.0 | 3.71e-01 | 89.1% | 99.4% |
| 5lnmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 3.60e-01 | 82.7% | 71.3% |
| 5k2xA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 37.0 | 2.58e-01 | 76.4% | 63.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3350186 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.84 | 73.0 | 6.75e-01 | 99.1% | 74.8% |
| 3234469 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.81 | 76.0 | 5.44e-01 | 100.0% | 43.2% |
| 3607513 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.79 | 74.0 | 5.44e-01 | 100.0% | 44.8% |
| 3700612 | 7529.1.1.4 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C | 0.79 | 74.0 | 5.25e-01 | 100.0% | 43.0% |
| 3569469 | 7529.1.1.10 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › AKAP_110 | 0.78 | 69.0 | 5.38e-01 | 100.0% | 47.0% |
| 3838643 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.69 | 48.0 | 5.03e-01 | 88.2% | 80.0% |
| 4031586 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.66 | 41.0 | 3.88e-01 | 73.6% | 51.9% |
| 3413443 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.63 | 51.0 | 3.96e-01 | 88.2% | 41.6% |
| 5063752 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.63 | 42.0 | 4.64e-01 | 83.6% | 92.5% |
| 4017832 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.61 | 42.0 | 4.33e-01 | 83.6% | 74.3% |
| 4971928 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 46.0 | 3.47e-01 | 86.4% | 32.5% |
| 4946571 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.58 | 40.0 | 3.27e-01 | 73.6% | 38.0% |
| 3217430 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.56 | 50.0 | 3.79e-01 | 97.3% | 85.5% |
| 5049125 | 7550.1.1.0 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain | 0.55 | 38.0 | 3.38e-01 | 70.9% | 90.6% |
| 4943316 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 42.0 | 3.41e-01 | 80.9% | 45.2% |
| 5073940 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 43.0 | 3.66e-01 | 83.6% | 73.3% |
| 5028084 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.54 | 44.0 | 3.22e-01 | 88.2% | 67.8% |
| 5025735 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 41.0 | 3.28e-01 | 82.7% | 94.8% |
| 4165877 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.52 | 35.0 | 2.83e-01 | 70.0% | 53.3% |