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parg

Euk-Vir

Sucra_jujuba_nucleopolyhedrovirus

parg__YP_009186789__Sucra_jujuba_nucleopolyhedrovirus__1563660

Identity

Accession:
YP_009186789 ↗
Protein ID:
parg
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Sucra_jujuba_nucleopolyhedrovirus

TaxID: 1563660

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-107
PDB
D2 high residues 178-290
PDB
Domain cluster: rep: polyADP-ribose_glycohydrolase__YP_010086971__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025__D109-212
D3 medium residues 300-330_518-562
PDB
Domain cluster: rep: poly_ADP-ribose_glycohydrolase__YP_006607850__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D165-184_371-414
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3234469 7529.1.1.4 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C 0.68 61.0 4.09e-01 100.0% 93.7%
3708050 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 41.0 4.29e-01 85.5% 75.7%
4937420 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 48.0 2.95e-01 86.8% 57.0%
3565700 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.81e-01 92.1% 92.4%
D4 medium residues 331-517
PDB
Domain cluster: rep: PARG__YP_008378315__Hemileuca_sp._nucleopolyhedrovirus__1367203__D353-496
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dx6A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.74 55.0 5.95e-01 100.0% 89.2%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 41.0 4.67e-01 100.0% 76.8%
7yjmB01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.65 37.0 3.43e-01 100.0% 43.6%
1tq8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 26.0 3.06e-01 96.8% 52.8%
3t1iA02 3.30.110.110 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Mre11, capping domain 0.60 32.0 4.25e-01 96.8% 98.9%
3if5A02 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.59 29.0 3.91e-01 71.7% 93.3%
3lklA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.59 28.0 3.77e-01 91.4% 87.1%
1e8cB03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.58 32.0 3.66e-01 89.3% 69.7%
1rybA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.58 41.0 4.14e-01 96.8% 71.5%
1vc1A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.57 31.0 3.92e-01 97.9% 88.2%
1a9xA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 35.0 4.35e-01 98.9% 100.0%
2xzmK00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.55 33.0 3.72e-01 96.8% 76.4%
5f2hA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 37.0 3.77e-01 95.7% 69.4%
1ykgA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 36.0 3.97e-01 94.1% 82.9%
3t6oA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.55 31.0 3.81e-01 97.9% 87.3%
5znqA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 36.0 3.69e-01 100.0% 69.4%
3ny7A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.53 31.0 3.76e-01 91.4% 89.8%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 3.60e-01 100.0% 61.1%
4basA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 4.29e-01 97.9% 90.7%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 4.10e-01 97.3% 84.4%
1sxjE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 3.82e-01 100.0% 82.7%
4kp1A02 3.30.499.10 Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 0.51 32.0 3.58e-01 100.0% 79.1%
2gnoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 4.07e-01 100.0% 98.5%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 3.87e-01 96.8% 84.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2601224 7529.1.1.4 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C 0.82 73.0 6.38e-01 100.0% 64.8%
3491231 7529.1.1.4 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_C 0.79 74.0 6.48e-01 100.0% 70.0%
4072110 2495.1.1.1 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.69 30.0 4.01e-01 100.0% 74.0%
3495573 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.66 28.0 3.90e-01 96.8% 78.9%
3734095 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.66 62.0 5.97e-01 99.5% 96.1%
4000049 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.65 37.0 3.10e-01 100.0% 32.8%
3435087 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.63 38.0 4.68e-01 96.8% 96.5%
5019274 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 4.42e-01 100.0% 78.8%
3447174 7512.1.1.77 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.59 38.0 3.36e-01 100.0% 43.6%
4889657 7516.1.1.37 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN 0.59 26.0 2.63e-01 97.3% 38.1%
3462418 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.58 39.0 2.84e-01 100.0% 25.9%
3210647 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.58 37.0 4.24e-01 100.0% 88.5%
4946571 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.57 38.0 3.77e-01 91.4% 61.5%
3838596 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.54 38.0 3.70e-01 91.4% 63.9%
4553664 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.54 42.0 3.65e-01 100.0% 53.9%
3219757 2496.1.1.2 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.54 36.0 4.15e-01 91.4% 93.3%
3937689 2496.1.1.2 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.54 37.0 4.14e-01 90.9% 88.7%
5073940 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 41.0 4.23e-01 97.9% 85.6%
3999525 2496.1.1.1 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO 0.52 34.0 3.24e-01 72.2% 54.9%
3786036 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 40.0 4.03e-01 96.8% 80.5%
4051276 2008.1.1.96 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RmuC 0.51 39.0 3.83e-01 91.4% 71.9%
None — 0.51 36.0 3.55e-01 100.0% 66.5%
3415425 2496.1.1.1 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO 0.50 34.0 3.32e-01 72.2% 62.0%
None — 0.50 36.0 3.85e-01 100.0% 86.5%
5052690 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 39.0 3.97e-01 96.8% 81.9%
4665370 2004.1.1.432 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.50 35.0 3.79e-01 100.0% 83.1%