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pe38
Euk-VirOxyplax_ochracea_nucleopolyhedrovirus
pe38__YP_009666539__Oxyplax_ochracea_nucleopolyhedrovirus__2083176
Identity
- Accession:
- YP_009666539 ↗
- Protein ID:
- pe38
- Kingdom:
- euk
Quality
69.4
mean pLDDT
Taxonomy
TaxID: 2083176
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-145
Domain cluster:
rep: CG30__YP_010086494__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D3-115
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00097.32 best | zf-C3HC4 | 21.7 | 2.00e-04 | 58.0% | 100.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 52.0 | 5.81e-01 | 75.0% | 85.9% |
| 3nw0A03 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 46.0 | 5.52e-01 | 95.5% | 100.0% |
| 1wjvA01 | 3.30.1490.490 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.68 | 37.0 | 4.71e-01 | 75.0% | 92.2% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 35.0 | 4.00e-01 | 75.0% | 78.5% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 24.0 | 3.65e-01 | 75.0% | 94.1% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.57 | 36.0 | 3.90e-01 | 70.5% | 77.8% |
| 2petA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.60e-01 | 72.7% | 73.9% |
| 6u7jA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.83e-01 | 73.9% | 70.8% |
| 2r15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.60e-01 | 77.3% | 69.4% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.47e-01 | 83.0% | 59.2% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.58e-01 | 75.0% | 70.7% |
| 3itwB01 | 3.30.720.120 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.50 | 25.0 | 2.82e-01 | 79.5% | 59.1% |
| 7qi3A01 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.50 | 42.0 | 2.95e-01 | 96.6% | 82.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3691267 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.82 | 58.0 | 5.83e-01 | 78.4% | 72.2% |
| 3229025 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.80 | 64.0 | 6.87e-01 | 87.5% | 97.3% |
| 3659589 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.80 | 54.0 | 6.24e-01 | 76.1% | 93.8% |
| 4018018 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.80 | 56.0 | 5.33e-01 | 72.7% | 80.6% |
| None | — | 0.80 | 54.0 | 5.80e-01 | 75.0% | 81.3% | |
| 3400662 | 376.1.1.70 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING | 0.79 | 55.0 | 5.10e-01 | 75.0% | 58.2% |
| 3299009 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.79 | 55.0 | 5.65e-01 | 72.7% | 76.5% |
| 3503755 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.78 | 51.0 | 6.05e-01 | 70.5% | 100.0% |
| 4028785 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.78 | 56.0 | 5.87e-01 | 78.4% | 82.5% |
| 3397518 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.76 | 47.0 | 5.79e-01 | 76.1% | 100.0% |
| 3324882 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.76 | 63.0 | 6.62e-01 | 94.3% | 96.2% |
| 3722915 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.76 | 54.0 | 5.93e-01 | 85.2% | 92.9% |
| 3243430 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.74 | 53.0 | 5.15e-01 | 75.0% | 68.4% |
| 3596561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.74 | 56.0 | 6.16e-01 | 84.1% | 100.0% |
| 3829583 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.73 | 60.0 | 6.28e-01 | 87.5% | 96.2% |
| 4946175 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.73 | 54.0 | 5.81e-01 | 78.4% | 98.7% |
| 3738043 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.71 | 57.0 | 5.60e-01 | 85.2% | 92.6% |
| 3484418 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.71 | 58.0 | 5.83e-01 | 86.4% | 94.4% |
| 3594491 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 57.0 | 6.11e-01 | 85.2% | 100.0% |
| 3521647 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.64 | 29.0 | 3.33e-01 | 75.0% | 56.9% |
| 4013642 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 46.0 | 4.74e-01 | 77.3% | 95.3% |
| 3918272 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.62 | 28.0 | 3.31e-01 | 75.0% | 61.7% |
| 3869469 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.60 | 44.0 | 3.78e-01 | 77.3% | 50.7% |
| 3592412 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 55.0 | 4.29e-01 | 100.0% | 71.7% |
| 3614897 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.59 | 55.0 | 4.76e-01 | 100.0% | 93.0% |
| 3450171 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.58 | 47.0 | 4.42e-01 | 87.5% | 97.1% |
| 3486646 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 42.0 | 3.96e-01 | 84.1% | 91.2% |
| 3283215 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 26.0 | 2.95e-01 | 75.0% | 58.5% |
| 3396740 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 31.0 | 3.10e-01 | 98.9% | 54.7% |
| 3392692 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.51 | 29.0 | 3.45e-01 | 73.9% | 81.7% |
| 4865211 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.51 | 25.0 | 3.40e-01 | 71.6% | 93.2% |
| 4011289 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.50 | 39.0 | 2.90e-01 | 85.2% | 91.7% |
| 3472118 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 35.0 | 3.05e-01 | 72.7% | 72.1% |
| 4862964 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.50 | 35.0 | 2.76e-01 | 72.7% | 45.5% |
D2
medium
residues 199-258
Domain cluster:
representative