pe38_like_protein

Euk-Vir

Condylorrhiza_vestigialis_MNPV

pe38_like_protein__YP_009118488__Condylorrhiza_vestigialis_MNPV__1592576

Identity

73.9 mean pLDDT

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Condylorrhiza_vestigialis_mutiple_nucleopolyhedrovirus

TaxID: 1592576

View cluster (2 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-139_154-231

PDB

Domain cluster: representative

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13639.13 best	zf-RING_2	27.4	4.40e-06	30.8%	97.7%
PF00097.32	zf-C3HC4	30.8	3.00e-07	29.2%	100.0%
PF13445.13	zf-RING_UBOX	27.0	4.90e-06	28.1%	100.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8i3jA01	1.20.920.20	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.54	38.0	3.41e-01	70.3%	81.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4477006	874.1.1.2 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge	0.53	37.0	2.86e-01	70.3%	81.2%
4991922	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.53	41.0	4.08e-01	96.2%	76.4%

D2 medium residues 232-282_334-353

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6r1nA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.75	66.0	5.70e-01	93.0%	81.6%
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.65	56.0	4.43e-01	95.8%	59.2%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.62	57.0	5.35e-01	100.0%	86.0%
1nzeA00	1.20.120.290	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle	0.62	43.0	3.64e-01	95.8%	45.5%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.60	50.0	4.60e-01	95.8%	69.2%
4kjmB01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.60	35.0	3.64e-01	100.0%	61.9%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.59	40.0	3.81e-01	97.2%	61.0%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.55	38.0	3.19e-01	84.5%	41.1%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.55	44.0	3.75e-01	93.0%	54.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3699444	3755.3.1.6 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Flagellar_rod	0.81	73.0	5.04e-01	97.2%	50.7%
3659069	604.7.1.1 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA	0.70	65.0	5.35e-01	100.0%	84.2%
3764851	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.65	60.0	5.49e-01	100.0%	85.6%
3848917	3939.1.1.0 ↗	alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain	0.63	58.0	5.49e-01	100.0%	90.6%
5073974	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.56	49.0	4.89e-01	97.2%	94.7%

D3 medium residues 354-407

PDB

Domain cluster: representative