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penton_base
Euk-VirSimian_adenovirus_DM-2014
penton_base__YP_009109577__Simian_adenovirus_DM-2014__1560346
Identity
- Accession:
- YP_009109577 ↗
- Protein ID:
- penton_base
- Kingdom:
- euk
Quality
79.3
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Simian_adenovirus_DM-2014
TaxID: 1560346
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-128_348-384_435-481
Domain cluster:
rep: capsid_protein_III__YP_009505659__Fowl_aviadenovirus_6__172862__D107-170_410-455_491-547
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01686.24 best | Adeno_Penton_B | 122.3 | 2.80e-35 | 46.8% | 15.2% |
| PF01686.24 | Adeno_Penton_B | 73.1 | 2.50e-20 | 31.2% | 10.2% |
| PF01686.24 | Adeno_Penton_B | 48.8 | 5.90e-13 | 26.6% | 8.3% |
D2
medium
residues 129-206_226-275_317-343
Domain cluster:
rep: III__YP_003933585__Turkey_adenovirus_1__878329__D145-233_253-299_358-382
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01686.24 best | Adeno_Penton_B | 191.0 | 4.30e-56 | 83.2% | 32.2% |
D3
medium
residues 207-225_276-316
Domain cluster:
rep: III__YP_004123742__Murine_adenovirus_2__931972__D200-218_268-311
D4
medium
residues 385-434
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01686.24 best | Adeno_Penton_B | 68.7 | 5.40e-19 | 100.0% | 10.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jqlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 43.0 | 3.16e-01 | 100.0% | 62.4% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.38e-01 | 100.0% | 84.7% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.51 | 38.0 | 2.79e-01 | 84.0% | 45.5% |
| 3ke6A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 37.0 | 2.91e-01 | 86.0% | 75.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3426002 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.56 | 36.0 | 3.68e-01 | 84.0% | 66.0% |
| 3600173 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 44.0 | 3.13e-01 | 100.0% | 25.0% |
| 4977797 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 43.0 | 3.34e-01 | 100.0% | 65.0% |
| 5039553 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 41.0 | 2.70e-01 | 92.0% | 68.2% |