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penton_base
Euk-VirBat_mastadenovirus_WIV12
penton_base__YP_009272879__Bat_mastadenovirus_WIV12__1788434
Identity
- Accession:
- YP_009272879 ↗
- Protein ID:
- penton_base
- Kingdom:
- euk
Quality
80.0
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Bat_mastadenovirus_WIV12
TaxID: 1788434
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-121_344-389_425-477
Domain cluster:
rep: capsid_protein_III__YP_009505659__Fowl_aviadenovirus_6__172862__D107-170_410-455_491-547
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01686.24 best | Adeno_Penton_B | 117.2 | 1.00e-33 | 43.0% | 15.9% |
| PF01686.24 | Adeno_Penton_B | 84.1 | 1.10e-23 | 32.0% | 11.7% |
| PF01686.24 | Adeno_Penton_B | 56.0 | 3.90e-15 | 30.2% | 10.7% |
D2
high
residues 125-337
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01686.24 best | Adeno_Penton_B | 334.0 | 1.70e-99 | 100.0% | 46.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.94 | 92.0 | 8.19e-01 | 100.0% | 75.7% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.71 | 24.0 | 4.20e-01 | 89.7% | 94.0% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.58 | 24.0 | 3.06e-01 | 87.3% | 62.4% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 21.0 | 2.88e-01 | 90.6% | 70.6% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 26.0 | 3.53e-01 | 88.7% | 98.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2528175 | 6009.1.1.0 ↗ | a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein | 0.93 | 92.0 | 8.60e-01 | 100.0% | 93.1% |
| 1158630 | 6009.1.1.1 ↗ | a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Adeno_Penton_B | 0.93 | 91.0 | 8.69e-01 | 100.0% | 92.9% |
| 4889927 | 6009.1.1.1 ↗ | a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Adeno_Penton_B | 0.92 | 84.0 | 8.25e-01 | 96.2% | 88.7% |
| 4216863 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 23.0 | 3.39e-01 | 91.1% | 92.9% |