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pep
Euk-VirTrichoplusia_ni_granulovirus_LBIV-12
pep__YP_009506086__Trichoplusia_ni_granulovirus_LBIV-12__1916701
Identity
- Accession:
- YP_009506086 ↗
- Protein ID:
- pep
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Taxonomy
TaxID: 1916701
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-88
Domain cluster:
rep: MK448516.1__QBX10840.1__JavanS490_0006__00006__D2-76
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04512.19 best | Baculo_PEP_N | 62.1 | 8.40e-17 | 81.8% | 73.2% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.73 | 63.0 | 6.02e-01 | 93.2% | 100.0% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.68 | 60.0 | 5.65e-01 | 97.7% | 96.2% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.62 | 34.0 | 3.51e-01 | 78.4% | 57.1% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 32.0 | 3.85e-01 | 88.6% | 77.6% |
| 1m1hA02 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.58 | 34.0 | 3.55e-01 | 86.4% | 62.2% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.58 | 32.0 | 3.54e-01 | 87.5% | 68.1% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.57 | 43.0 | 3.48e-01 | 89.8% | 42.8% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 42.0 | 4.13e-01 | 80.7% | 80.6% |
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.59e-01 | 97.7% | 96.9% |
| 6sulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 39.0 | 3.66e-01 | 77.3% | 81.5% |
| 3d7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 4.07e-01 | 80.7% | 93.8% |
| 1uh9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 40.0 | 3.40e-01 | 84.1% | 76.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 34.0 | 3.12e-01 | 94.3% | 49.2% |
| 4r78A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.87e-01 | 83.0% | 79.2% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 36.0 | 3.44e-01 | 77.3% | 63.4% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 36.0 | 3.28e-01 | 72.7% | 78.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.51 | 29.0 | 3.27e-01 | 80.7% | 73.8% |
| 1l1dA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.50 | 37.0 | 3.22e-01 | 79.5% | 61.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1790169 | 101.1.9.7 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Baculo_PEP_N | 0.88 | 77.0 | 7.19e-01 | 93.2% | 83.0% |
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.84 | 71.0 | 6.65e-01 | 88.6% | 77.1% |
| 4998593 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.77 | 65.0 | 5.94e-01 | 90.9% | 77.4% |
| 3529465 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.74 | 63.0 | 5.96e-01 | 92.0% | 94.3% |
| 3179613 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.71 | 57.0 | 5.72e-01 | 88.6% | 84.4% |
| 3480621 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 59.0 | 5.75e-01 | 90.9% | 100.0% |
| 3893451 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.70 | 62.0 | 5.87e-01 | 97.7% | 100.0% |
| 4003595 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.69 | 59.0 | 5.20e-01 | 94.3% | 76.7% |
| 4572703 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.68 | 56.0 | 4.84e-01 | 90.9% | 57.8% |
| 3171223 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.68 | 56.0 | 5.30e-01 | 90.9% | 75.0% |
| 3401853 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.66 | 37.0 | 3.02e-01 | 81.8% | 32.0% |
| 3740323 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.66 | 53.0 | 4.92e-01 | 88.6% | 69.6% |
| 3400699 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.64 | 53.0 | 5.01e-01 | 90.9% | 100.0% |
| 4223228 | 101.1.9.21 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N | 0.63 | 51.0 | 5.12e-01 | 87.5% | 96.7% |
| 4946194 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.62 | 47.0 | 3.44e-01 | 79.5% | 70.2% |
| 5081122 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.62 | 34.0 | 3.24e-01 | 90.9% | 46.0% |
| 3492308 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.62 | 36.0 | 2.30e-01 | 85.2% | 12.8% |
| 3988707 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 29.0 | 3.54e-01 | 78.4% | 69.1% |
| 3214527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 52.0 | 4.60e-01 | 93.2% | 87.2% |
| 2576213 | 219.3.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain | 0.60 | 42.0 | 3.07e-01 | 72.7% | 65.7% |
| 3619623 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.59 | 42.0 | 4.83e-01 | 93.2% | 100.0% |
| 1499696 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.58 | 32.0 | 3.61e-01 | 87.5% | 71.2% |
| 3722269 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 35.0 | 3.87e-01 | 70.5% | 77.1% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 35.0 | 4.06e-01 | 78.4% | 86.2% |
| 3206115 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 33.0 | 3.71e-01 | 80.7% | 75.7% |
| 2774111 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.55 | 33.0 | 3.53e-01 | 80.7% | 67.9% |
| 3218678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 28.0 | 3.20e-01 | 73.9% | 64.6% |
| 4890877 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.54 | 34.0 | 3.01e-01 | 85.2% | 42.1% |
| 1498253 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.54 | 34.0 | 3.62e-01 | 80.7% | 74.7% |
| None | — | 0.53 | 45.0 | 3.10e-01 | 95.5% | 63.8% | |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 33.0 | 3.61e-01 | 75.0% | 80.0% |
| 4299002 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.52 | 44.0 | 3.45e-01 | 96.6% | 94.5% |
| 5791 | 295.1.1.6 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 | 0.52 | 34.0 | 3.13e-01 | 94.3% | 49.6% |
| 3907133 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 43.0 | 3.06e-01 | 93.2% | 65.0% |
| 3987244 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.51 | 44.0 | 3.15e-01 | 98.9% | 66.0% |
| 3707402 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.51 | 33.0 | 3.61e-01 | 79.5% | 78.7% |
| 3955533 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.51 | 33.0 | 3.56e-01 | 81.8% | 77.3% |
| 4002382 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.50 | 40.0 | 2.83e-01 | 87.5% | 68.8% |
D2
medium
residues 89-144