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peptidase_MA_superfamily

Euk-Vir

Peridroma_alphabaculovirus

peptidase_MA_superfamily__YP_009049852__Peridroma_alphabaculovirus__1346829

Identity

Accession:
YP_009049852 ↗
Protein ID:
peptidase_MA_superfamily
Kingdom:
euk

Quality

75.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Peridroma_alphabaculovirus

TaxID: 1346829

Cluster

View cluster (19 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 487-571_594-659
PDB
Domain cluster: rep: hypothetical_protein__YP_009117049__Pseudoplusia_includens_SNPV_IE__1592335__D492-657
D2 high residues 662-762
PDB
Domain cluster: rep: hypothetical_protein_McnAVgp042__NP_613125__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D640-729
D3 medium residues 26-161
PDB
Domain cluster: rep: hypothetical_protein__YP_009011101__Mamestra_brassicae_multiple_nucleopolyhedrovirus__78219__D16-125
D4 medium residues 162-245
PDB
Domain cluster: rep: peptidase_MA_superfamily__YP_009552261__Malacosoma_neustria_nucleopolyhedrovirus__38012__D148-255
D5 medium residues 246-373
PDB
Domain cluster: rep: ORF105_protein__YP_009552665__Operophtera_brumata_nucleopolyhedrovirus__1046267__D232-367
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ar9A01 3.40.30.160 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain 0.78 73.0 7.06e-01 100.0% 90.8%
7y7oA01 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.63 52.0 5.09e-01 90.6% 79.7%
4k3bA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.63 28.0 3.21e-01 76.6% 54.3%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 26.0 3.24e-01 73.4% 59.7%
4fgmA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.61 54.0 4.16e-01 96.1% 48.4%
1tviA00 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.61 50.0 4.79e-01 89.8% 76.0%
1pwuA04 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.59 53.0 4.43e-01 98.4% 81.0%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 26.0 3.20e-01 78.1% 62.8%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.58 40.0 4.18e-01 98.4% 76.3%
6rqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 50.0 4.04e-01 98.4% 88.6%
2e3tB03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.55 24.0 3.23e-01 99.2% 78.7%
1gkkA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.69e-01 94.5% 85.9%
1xaxA00 3.40.390.30 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" 0.55 45.0 4.42e-01 90.6% 91.7%
1ui0A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.54 47.0 4.14e-01 96.1% 89.1%
4f1jA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 45.0 3.93e-01 93.0% 98.5%
5g5gC03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.53 29.0 3.29e-01 89.1% 71.0%
3axbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 46.0 3.71e-01 96.9% 90.3%
2cxcA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 25.0 3.18e-01 78.9% 79.7%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.80e-01 89.1% 95.6%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.94e-01 97.7% 97.5%
1x31B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.69e-01 96.9% 87.0%
2uz0A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.51e-01 94.5% 89.7%
2hi1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.50 42.0 3.17e-01 91.4% 98.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4400562 2498.1.1.16 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M9 0.84 80.0 6.03e-01 100.0% 47.9%
None — 0.78 73.0 5.56e-01 100.0% 46.8%
1147778 2498.1.1.16 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M9 0.78 73.0 5.53e-01 100.0% 47.1%
4961052 2498.1.1.160 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_MA_2 0.68 60.0 4.75e-01 100.0% 48.4%
4143474 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.68 35.0 3.67e-01 100.0% 53.3%
3693426 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 54.0 4.56e-01 88.3% 73.8%
4304800 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.65 53.0 4.93e-01 86.7% 83.6%
3574082 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.65 40.0 4.63e-01 75.8% 86.7%
4137501 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.63 32.0 3.38e-01 84.4% 53.0%
4516508 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.63 53.0 4.88e-01 92.2% 78.2%
4174312 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.63 53.0 4.93e-01 92.2% 84.4%
4299039 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.62 52.0 4.85e-01 90.6% 85.6%
3720125 2004.1.1.325 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC-Trs85 0.61 52.0 4.40e-01 91.4% 93.8%
3934320 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.61 55.0 4.27e-01 97.7% 81.1%
3399212 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.61 56.0 4.39e-01 99.2% 83.5%
4073443 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.61 51.0 4.70e-01 91.4% 84.2%
4078443 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.60 51.0 4.71e-01 92.2% 78.8%
4070908 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.60 48.0 4.75e-01 85.2% 83.0%
4582037 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.59 49.0 4.83e-01 95.3% 82.1%
4276160 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 49.0 4.77e-01 90.6% 84.9%
4950270 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 51.0 4.48e-01 96.9% 71.3%
4048619 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 46.0 4.52e-01 90.6% 78.6%
4977037 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 52.0 4.16e-01 99.2% 88.0%
4374045 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.57 47.0 4.74e-01 90.6% 87.7%
4501680 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.57 47.0 4.64e-01 92.2% 82.9%
4935732 2008.1.1.165 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI 0.56 43.0 4.56e-01 79.7% 100.0%
3387840 327.10.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA 0.54 30.0 3.10e-01 84.4% 55.0%
5007356 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 39.0 2.93e-01 79.7% 50.7%
3888866 2007.1.4.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PI3K_1B_p101 0.50 42.0 3.59e-01 91.4% 91.6%
4471786 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 38.0 3.18e-01 78.1% 77.7%
5071431 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.50 27.0 3.37e-01 92.2% 88.0%
D6 medium residues 374-485
PDB
Domain cluster: rep: asb031__YP_009112592__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D385-500