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peptidase_MA_superfamily

Euk-Vir

Malacosoma_neustria_nucleopolyhedrovirus

peptidase_MA_superfamily__YP_009552261__Malacosoma_neustria_nucleopolyhedrovirus__38012

Identity

Accession:
YP_009552261 ↗
Protein ID:
peptidase_MA_superfamily
Kingdom:
euk

Quality

73.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Malacosoma_neustria_nucleopolyhedrovirus

TaxID: 38012

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 500-668
PDB
Domain cluster: rep: unknown_similar_to_AMEV003__YP_008004365__Choristoneura_biennis_entomopoxvirus__10288__D474-617
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 18.0 3.09e-01 85.2% 100.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.52 45.0 4.49e-01 94.7% 91.2%
1u6zA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.52 41.0 4.02e-01 82.2% 97.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 30.0 3.74e-01 94.1% 96.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993926 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.54 25.0 3.30e-01 74.6% 78.9%
5023598 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.52 24.0 2.98e-01 81.1% 69.0%
4224947 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.50 26.0 3.25e-01 81.1% 79.0%
3763126 150.3.1.30 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL31 0.50 29.0 3.23e-01 76.9% 70.0%
D2 high residues 671-765
PDB
Domain cluster: rep: hypothetical_protein_McnAVgp042__NP_613125__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D640-729
D3 medium residues 22-88_100-147
PDB
Domain cluster: rep: orf116__YP_009186807__Sucra_jujuba_nucleopolyhedrovirus__1563660__D23-214
D4 medium residues 148-255
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.73 60.0 4.25e-01 93.5% 29.1%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 53.0 5.21e-01 80.6% 94.7%
2olcA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.68 59.0 4.37e-01 95.4% 94.6%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.66 49.0 4.26e-01 76.9% 85.3%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 50.0 4.80e-01 79.6% 93.5%
5ux2B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 46.0 3.71e-01 73.1% 97.7%
1k3kA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.65 49.0 4.50e-01 80.6% 63.0%
2ovjA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.65 54.0 4.47e-01 92.6% 90.5%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.64 54.0 5.22e-01 94.4% 100.0%
1dl2A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 54.0 3.54e-01 100.0% 44.1%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.61 53.0 4.18e-01 96.3% 59.4%
2iu1A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 52.0 4.43e-01 94.4% 60.1%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 46.0 4.25e-01 81.5% 78.6%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 51.0 5.05e-01 90.7% 87.5%
4i4cB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 53.0 3.65e-01 100.0% 80.4%
4g10A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 51.0 4.71e-01 92.6% 84.6%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 3.69e-01 92.6% 38.4%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 4.71e-01 90.7% 82.9%
2if4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 49.0 4.62e-01 91.7% 75.2%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 49.0 4.45e-01 91.7% 70.3%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.58 46.0 4.36e-01 92.6% 71.9%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 49.0 3.74e-01 94.4% 46.2%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.57 42.0 4.18e-01 77.8% 81.4%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 38.0 3.95e-01 80.6% 73.3%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.53 39.0 3.30e-01 78.7% 62.8%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.52 42.0 4.13e-01 86.1% 94.0%
2e2eA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 3.88e-01 93.5% 74.2%
2yskA00 1.10.490.110 Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267 0.51 36.0 3.36e-01 75.0% 78.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3788097 109.4.1.1544 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIP120, TPR_CAND1 0.67 60.0 3.58e-01 99.1% 16.8%
3348578 109.4.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 0.66 55.0 4.23e-01 92.6% 69.4%
3806870 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.64 46.0 4.74e-01 74.1% 81.0%
3452150 109.4.1.97 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_12 0.63 55.0 4.12e-01 97.2% 48.0%
3384607 109.4.1.90 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOM20_plant 0.63 52.0 4.22e-01 89.8% 61.5%
3269269 109.4.1.31 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.62 55.0 4.33e-01 100.0% 52.3%
3785733 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 4.32e-01 97.2% 61.4%
3635384 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.61 45.0 4.73e-01 77.8% 86.0%
3510669 109.4.1.297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EMC2 0.61 49.0 4.47e-01 87.0% 65.7%
3232394 109.4.1.264 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 0.60 51.0 3.60e-01 91.7% 40.9%
3221834 109.4.1.264 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 0.60 50.0 3.99e-01 90.7% 67.7%
3689009 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 52.0 4.28e-01 95.4% 87.2%
3738962 109.4.1.1329 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234 0.60 53.0 4.22e-01 100.0% 85.3%
3679873 109.4.1.90 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOM20_plant 0.59 50.0 4.39e-01 93.5% 75.5%
3169162 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 4.51e-01 92.6% 76.6%
4139505 601.13.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS 0.56 42.0 3.95e-01 77.8% 71.5%
3631318 109.4.1.98 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.70e-01 93.5% 49.7%
4526844 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 41.0 3.56e-01 81.5% 90.3%
4356223 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 39.0 3.62e-01 75.0% 75.6%
3625345 109.4.1.297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EMC2 0.52 43.0 3.85e-01 94.4% 71.5%
5045655 2003.2.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.51 37.0 2.81e-01 76.9% 75.8%
4336179 3322.1.1.1 ↗ alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.51 40.0 3.78e-01 84.3% 85.4%
D5 medium residues 256-384
PDB
Domain cluster: rep: ORF105_protein__YP_009552665__Operophtera_brumata_nucleopolyhedrovirus__1046267__D232-367
D6 medium residues 385-496
PDB
Domain cluster: rep: asb031__YP_009112592__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D385-500