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phid_transmission_P5_protein
Euk-VirWhite_clover_mottle_virus
phid_transmission_P5_protein__YP_009315898__White_clover_mottle_virus__1913024
Identity
- Accession:
- YP_009315898 ↗
- Protein ID:
- phid_transmission_P5_protein
- Kingdom:
- euk
Quality
68.8
mean pLDDT
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-199
Domain cluster:
rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00894.25 best | Luteo_coat | 200.0 | 2.00e-59 | 99.3% | 100.0% |
D2
high
residues 234-434
Domain cluster:
rep: P3-P5_polyprotein__YP_009552852__Apple_luteovirus_1__2170544__D231-433
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01690.22 best | PLRV_ORF5 | 149.6 | 1.90e-43 | 100.0% | 38.6% |
D3
high
residues 517-575
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 56.0 | 4.95e-01 | 94.9% | 60.0% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 58.0 | 4.91e-01 | 91.5% | 73.7% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 48.0 | 4.91e-01 | 79.7% | 76.8% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.68 | 46.0 | 4.03e-01 | 71.2% | 51.7% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.68 | 49.0 | 4.46e-01 | 83.1% | 57.7% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 45.0 | 3.53e-01 | 76.3% | 36.2% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.62 | 40.0 | 3.95e-01 | 83.1% | 61.9% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 47.0 | 4.33e-01 | 79.7% | 94.5% |
| 3frqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 47.0 | 3.35e-01 | 100.0% | 59.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3983235 | 3330.1.1.1 ↗ | alpha arrays › Novel E3 ligase (NEL) › Novel E3 ligase (NEL) › Novel E3 ligase (NEL) › NEL | 0.78 | 70.0 | 4.41e-01 | 100.0% | 23.4% |
| 3494427 | 148.1.1.8 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa | 0.72 | 54.0 | 4.68e-01 | 81.4% | 51.6% |
| 4199515 | 589.1.2.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) | 0.72 | 65.0 | 4.65e-01 | 100.0% | 72.1% |
| 4665470 | 4030.1.1.2 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F-actin_cap_A | 0.71 | 40.0 | 4.18e-01 | 72.9% | 60.0% |
| 4093095 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.69 | 61.0 | 4.39e-01 | 100.0% | 34.3% |
| 3598925 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.67 | 48.0 | 3.62e-01 | 74.6% | 46.9% |
| 3396895 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.67 | 49.0 | 4.71e-01 | 79.7% | 78.6% |
| 3415904 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.67 | 46.0 | 4.04e-01 | 74.6% | 50.5% |
| 4029399 | 101.1.1.10 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ARID | 0.66 | 52.0 | 4.33e-01 | 84.7% | 53.0% |
| 4438700 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.61 | 46.0 | 4.10e-01 | 81.4% | 57.6% |
| 4332277 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.59 | 46.0 | 3.60e-01 | 83.1% | 42.4% |
| 3927475 | 192.19.1.0 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like | 0.59 | 51.0 | 5.30e-01 | 93.2% | 100.0% |
| 3659116 | 212.1.1.48 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › PF28653 | 0.57 | 48.0 | 3.21e-01 | 94.9% | 56.7% |
| 4943523 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 41.0 | 3.24e-01 | 78.0% | 80.8% |