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phosphatidylinositol_phosphate_kinase_motif-containing_protein

Euk-Vir

Pandoravirus_inopinatum

phosphatidylinositol_phosphate_kinase_motif-containing_protein__YP_009119866__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119866 ↗
Protein ID:
phosphatidylinositol_phosphate_kinase_motif-containing_protein
Kingdom:
euk

Quality

70.6 mean pLDDT

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 468-576
PDB
Domain cluster: rep: Morn_repeat_protein__YP_009119821__Pandoravirus_inopinatum__1605721__D361-382_400-503
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19253.5 best DUF5900 27.7 3.80e-06 96.3% 86.1%
D2 medium residues 117-261
PDB
D3 medium residues 262-328_350-360
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ztcA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 38.0 2.83e-01 73.1% 77.0%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 41.0 2.96e-01 85.9% 71.7%
1ltzA00 1.10.800.10 Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase 0.52 39.0 2.75e-01 82.1% 82.8%
D4 medium residues 361-429
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 42.0 4.04e-01 73.9% 58.4%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.64 49.0 3.99e-01 81.2% 76.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.62 47.0 4.11e-01 82.6% 57.1%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 48.0 4.05e-01 88.4% 99.2%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 51.0 4.27e-01 94.2% 59.5%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 41.0 4.05e-01 73.9% 100.0%
1hpwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.58 43.0 3.61e-01 82.6% 64.3%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.76e-01 98.6% 65.4%
2cwzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 38.0 3.13e-01 71.0% 83.9%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 40.0 3.72e-01 76.8% 60.0%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.82e-01 79.7% 64.4%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.55 46.0 3.34e-01 92.8% 34.0%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 37.0 3.11e-01 72.5% 85.8%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.54 47.0 2.93e-01 100.0% 43.8%
4dnuA00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.53 41.0 2.68e-01 88.4% 39.0%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 41.0 3.18e-01 92.8% 80.1%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.76e-01 98.6% 29.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890448 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.82 75.0 6.12e-01 98.6% 57.5%
3756866 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.81 75.0 6.52e-01 100.0% 70.0%
3434864 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.81 68.0 6.03e-01 89.9% 100.0%
3922383 79.1.1.27 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.81 73.0 6.79e-01 98.6% 81.2%
3844285 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.81 74.0 5.60e-01 100.0% 45.2%
4026029 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.80 74.0 5.87e-01 100.0% 63.8%
3932225 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.79 73.0 6.36e-01 100.0% 74.0%
3710981 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.78 68.0 5.39e-01 97.1% 48.9%
3718320 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 69.0 4.39e-01 98.6% 28.3%
3433407 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.76 68.0 5.35e-01 97.1% 65.9%
3594838 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.75 68.0 5.43e-01 98.6% 66.2%
4106800 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.74 65.0 5.77e-01 100.0% 68.4%
3679931 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.74 66.0 4.57e-01 97.1% 42.3%
4003791 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.73 67.0 4.88e-01 100.0% 46.7%
3664331 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.73 67.0 5.51e-01 100.0% 73.3%
4025855 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.73 66.0 5.13e-01 100.0% 58.6%
3608699 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.69 63.0 4.83e-01 100.0% 52.7%
3766391 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.67 52.0 3.94e-01 84.1% 37.5%
2649512 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.66 50.0 3.64e-01 81.2% 30.2%
3229101 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.63 48.0 4.72e-01 84.1% 75.3%
2390064 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.61 46.0 3.39e-01 82.6% 29.5%
4033695 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.61 53.0 4.68e-01 100.0% 69.5%
4120507 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 50.0 4.52e-01 91.3% 74.7%
3412007 292.2.1.13 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Chitin_bind_4 0.58 44.0 4.40e-01 81.2% 87.1%
5044144 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 48.0 3.84e-01 94.2% 91.0%
4606694 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.58 46.0 4.41e-01 91.3% 97.6%
None — 0.58 44.0 3.30e-01 84.1% 85.6%
3404297 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.58 42.0 4.57e-01 76.8% 100.0%
4471013 11.1.1.456 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YtkA 0.57 42.0 3.59e-01 78.3% 84.3%
3994169 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 45.0 3.13e-01 82.6% 87.3%
4681334 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.56 46.0 3.23e-01 100.0% 26.3%
4334199 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.55 47.0 3.92e-01 100.0% 53.6%
3668394 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.55 41.0 3.82e-01 85.5% 78.9%
5068496 5.1.4.471 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NHL 0.54 45.0 2.71e-01 100.0% 16.9%
4189805 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.53 45.0 3.46e-01 97.1% 83.6%
3408388 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.52 41.0 3.97e-01 88.4% 83.7%
5046458 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.52 41.0 3.18e-01 97.1% 36.0%
3413472 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 41.0 2.99e-01 94.2% 85.7%
3970026 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 42.0 2.88e-01 100.0% 47.1%
5038877 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.50 42.0 2.82e-01 100.0% 44.6%