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phospholipase-D-like_protein

Euk-Vir

Cotia_virus_SPAn232

phospholipase-D-like_protein__YP_005296349__Cotia_virus_SPAn232__930275

Identity

Accession:
YP_005296349 ↗
Protein ID:
phospholipase-D-like_protein
Kingdom:
euk

Quality

84.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Oryzopoxvirus› Cotia_virus_SPAn232

TaxID: 930275

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-185
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00297__D46-187
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13091.13 best PLDc_2 50.8 2.00e-13 76.1% 95.4%
PF00614.29 PLDc 45.1 8.60e-12 14.7% 92.9%
D2 medium residues 246-309_326-342
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13918.12 best PLDc_3 58.8 8.20e-16 95.1% 35.6%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggjA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.69 52.0 4.06e-01 100.0% 38.8%
2jieA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 52.0 3.34e-01 100.0% 35.5%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 52.0 3.49e-01 100.0% 47.2%
4impA02 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 46.0 3.51e-01 86.4% 61.1%
3c8zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 52.0 3.52e-01 100.0% 67.7%
3sp1A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 52.0 3.66e-01 100.0% 66.7%
1jeyB01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.59 46.0 3.38e-01 85.2% 44.5%
4mgrA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 51.0 3.32e-01 97.5% 57.1%
3eucA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 47.0 3.55e-01 88.9% 38.2%
1vp4A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 47.0 3.42e-01 87.7% 39.3%
1xu9C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 47.0 3.36e-01 88.9% 59.3%
1w4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 43.0 3.65e-01 82.7% 47.7%
2douA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 47.0 3.44e-01 87.7% 36.5%
4gm2A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 44.0 3.50e-01 84.0% 42.6%
1g01A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 50.0 3.35e-01 100.0% 40.1%
3dzzA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 46.0 3.31e-01 87.7% 34.4%
3k7yA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 49.0 3.43e-01 95.1% 55.0%
3lyuA01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.58 47.0 4.24e-01 97.5% 65.2%
3p9pA03 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 42.0 3.41e-01 81.5% 40.9%
2zpaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.99e-01 91.4% 54.4%
7exbA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 49.0 3.44e-01 100.0% 57.0%
3b5iB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.52e-01 100.0% 84.9%
4uc0A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 48.0 3.51e-01 100.0% 91.1%
2hu8A02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.47e-01 100.0% 42.1%
1kcxA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 3.16e-01 100.0% 41.3%
2b81C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 44.0 3.07e-01 92.6% 30.1%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 48.0 3.68e-01 100.0% 79.0%
4q0mA01 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.55 41.0 3.20e-01 84.0% 79.4%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.48e-01 85.2% 65.8%
2b8tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 3.44e-01 81.5% 49.6%
3pdwA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 41.0 3.88e-01 81.5% 74.0%
1zjjA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 41.0 3.63e-01 81.5% 60.7%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 41.0 3.45e-01 85.2% 88.6%
4jdpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 40.0 3.83e-01 81.5% 70.4%
1qyiA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 44.0 3.51e-01 95.1% 50.3%
3u40D00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 46.0 3.37e-01 100.0% 89.2%
6a6eA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 42.0 2.99e-01 87.7% 45.2%
1vkhA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.28e-01 100.0% 93.1%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.78e-01 100.0% 49.7%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 45.0 3.20e-01 100.0% 52.1%
7w72K01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.31e-01 100.0% 40.1%
1rqlA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 44.0 3.51e-01 97.5% 43.8%
3a2kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 45.0 3.93e-01 100.0% 73.3%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 40.0 2.97e-01 84.0% 36.4%
3tnjA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 43.0 3.84e-01 98.8% 62.0%
2yv9A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 34.0 3.14e-01 97.5% 49.1%
2ww5A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 46.0 3.48e-01 100.0% 54.0%
1nqkA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 45.0 3.04e-01 100.0% 64.3%
2fp3A01 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.30e-01 98.8% 70.5%
1z4mA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 45.0 3.79e-01 97.5% 66.9%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.51 43.0 3.03e-01 100.0% 33.4%
3mt0A00 3.40.50.12370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 3.13e-01 100.0% 67.3%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 43.0 3.68e-01 96.3% 94.2%
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.50 37.0 3.17e-01 80.2% 78.6%
1xviB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 41.0 3.57e-01 96.3% 98.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4434476 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.95 92.0 6.29e-01 100.0% 43.0%
3401497 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.95 91.0 6.57e-01 100.0% 50.8%
3263234 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.94 90.0 6.31e-01 100.0% 42.7%
3212910 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.93 89.0 6.31e-01 100.0% 49.8%
4890615 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.93 89.0 5.41e-01 100.0% 23.8%
3537783 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.93 88.0 6.18e-01 100.0% 44.5%
3243398 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.93 88.0 6.09e-01 100.0% 48.3%
3562956 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.92 87.0 6.12e-01 100.0% 47.3%
3652365 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.91 86.0 5.13e-01 100.0% 24.9%
3345295 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.91 86.0 5.64e-01 100.0% 41.5%
3908644 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.90 86.0 5.90e-01 100.0% 41.7%
3514027 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.89 85.0 6.00e-01 100.0% 46.0%
4970362 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.75 57.0 4.74e-01 100.0% 48.1%
5028114 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.73 56.0 4.52e-01 100.0% 44.8%
4986274 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.72 56.0 4.59e-01 100.0% 47.1%
5075218 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.71 57.0 4.51e-01 100.0% 44.5%
4947198 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.71 57.0 4.47e-01 100.0% 42.4%
4957753 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.71 54.0 4.28e-01 100.0% 41.9%
5040938 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.70 54.0 4.16e-01 100.0% 38.8%
3320588 2006.1.6.9 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Copine 0.69 55.0 4.43e-01 86.4% 59.4%
3801689 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.67 54.0 4.14e-01 85.2% 68.0%
5040292 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.66 52.0 4.15e-01 100.0% 43.2%
5003971 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.64 50.0 3.75e-01 96.3% 35.2%
3887752 7502.1.1.12 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Glyco_transf_10 0.62 37.0 3.82e-01 96.3% 61.5%
3261825 2007.15.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.61 43.0 3.75e-01 84.0% 48.0%
4958184 7512.1.1.107 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF354 0.61 49.0 3.92e-01 96.3% 44.4%
4989163 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 53.0 3.79e-01 97.5% 59.6%
5071348 7512.1.1.107 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF354 0.60 49.0 3.78e-01 97.5% 39.5%
4885816 375.1.1.10 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1e 0.60 52.0 3.74e-01 100.0% 82.0%
3335119 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.60 52.0 3.64e-01 96.3% 33.8%
3300451 2006.1.1.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PF28688 0.59 51.0 4.14e-01 97.5% 66.5%
4990263 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 50.0 4.25e-01 100.0% 57.5%
5050214 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 50.0 3.46e-01 100.0% 28.2%
None — 0.57 48.0 3.47e-01 97.5% 81.5%
4991210 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.57 50.0 3.63e-01 100.0% 95.8%
4974799 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.57 49.0 3.63e-01 96.3% 49.8%
4975222 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.56 45.0 3.51e-01 93.8% 62.5%
4957126 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.55 48.0 3.80e-01 100.0% 64.4%
4971422 7601.1.1.2 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › DUF362 0.55 49.0 3.39e-01 100.0% 51.4%
3200867 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.55 46.0 3.04e-01 98.8% 94.8%
5051208 7536.1.1.1 ↗ a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.55 49.0 3.41e-01 100.0% 39.2%
5014964 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 47.0 3.59e-01 95.1% 43.8%
4302118 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.54 46.0 3.59e-01 98.8% 42.2%
4011914 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.54 47.0 3.28e-01 100.0% 56.8%
3839001 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 42.0 2.92e-01 85.2% 44.4%
3241142 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 41.0 3.78e-01 84.0% 70.5%
3359336 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 47.0 3.49e-01 100.0% 43.3%
3294817 7575.1.1.3 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C13 0.53 46.0 3.65e-01 100.0% 57.7%
4328387 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.53 45.0 3.34e-01 100.0% 43.8%
3483382 7514.1.1.0 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.53 46.0 3.75e-01 100.0% 65.6%
5079237 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.52 45.0 3.35e-01 100.0% 89.6%
4999884 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 46.0 3.41e-01 100.0% 40.0%
4141794 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.52 43.0 3.09e-01 90.1% 81.2%
3864088 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 40.0 3.70e-01 85.2% 68.2%
2761420 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.52 45.0 3.27e-01 100.0% 55.4%
5043196 2002.1.1.208 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BtpA 0.52 43.0 3.15e-01 96.3% 59.2%
3660649 7516.1.1.8 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T 0.52 42.0 3.15e-01 97.5% 34.2%
3726143 323.1.1.20 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N 0.51 40.0 2.85e-01 87.7% 27.3%
4973369 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 44.0 3.26e-01 96.3% 39.0%
4088605 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.51 43.0 3.06e-01 97.5% 74.2%
1260958 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.51 44.0 3.66e-01 100.0% 56.5%
3688893 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 39.0 2.82e-01 87.7% 26.8%
4025850 2006.1.1.35 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like 0.51 43.0 3.53e-01 97.5% 50.3%
3215522 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.51 42.0 3.48e-01 96.3% 75.0%
D3 medium residues 310-325_343-407
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00614.29 best PLDc 23.9 4.60e-05 29.6% 82.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggjA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.80 68.0 5.23e-01 93.8% 44.2%
1byrA00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.79 70.0 5.53e-01 96.3% 50.0%
4urjD00 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.76 69.0 5.22e-01 96.3% 50.6%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 43.0 3.44e-01 80.2% 63.7%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 45.0 3.73e-01 86.4% 74.5%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 31.0 2.88e-01 87.7% 43.1%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 41.0 3.64e-01 84.0% 76.8%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.53 35.0 3.32e-01 70.4% 58.5%
3cerA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.52 38.0 2.86e-01 76.5% 51.5%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 36.0 3.10e-01 71.6% 94.0%
7tn8A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 3.20e-01 86.4% 66.7%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 3.22e-01 76.5% 86.6%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.17e-01 79.0% 47.4%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.03e-01 72.8% 68.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908644 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.94 90.0 6.14e-01 100.0% 40.4%
3243398 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.92 88.0 6.10e-01 100.0% 51.3%
3401497 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.92 88.0 6.38e-01 100.0% 51.8%
3562956 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.92 88.0 6.14e-01 100.0% 48.6%
4434476 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.92 88.0 6.07e-01 100.0% 45.7%
3235620 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.92 87.0 6.35e-01 100.0% 51.8%
3514027 300.1.1.17 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2, PLDc_3 0.91 87.0 6.12e-01 100.0% 47.9%
3212910 300.1.1.11 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_3 0.91 83.0 5.87e-01 95.1% 46.9%
5075695 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.80 71.0 5.79e-01 100.0% 54.3%
3282234 300.1.1.16 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 0.79 73.0 5.22e-01 100.0% 57.7%
5025440 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.79 67.0 5.22e-01 88.9% 48.4%
4514190 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.78 71.0 4.99e-01 98.8% 46.8%
4928167 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.77 70.0 5.22e-01 100.0% 51.3%
3965027 300.1.1.5 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › RE_NgoFVII 0.76 70.0 5.50e-01 100.0% 56.2%
5036368 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.74 68.0 5.34e-01 100.0% 78.1%
4991827 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.71 59.0 5.04e-01 87.7% 64.2%
4976955 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 60.0 4.17e-01 96.3% 29.8%
3260906 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 43.0 3.95e-01 71.6% 59.0%
3251731 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.59 41.0 3.34e-01 72.8% 40.6%
3607341 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.58 43.0 2.88e-01 77.8% 87.7%
3609936 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.75e-01 95.1% 99.0%
3921654 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 39.0 3.40e-01 75.3% 75.9%
3742540 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.55 47.0 3.02e-01 100.0% 85.6%
3412152 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 39.0 3.34e-01 75.3% 75.6%
3574882 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.53 38.0 3.23e-01 75.3% 73.2%
3798355 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 37.0 3.17e-01 75.3% 72.9%
4002771 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.07e-01 71.6% 44.4%
5041843 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.52 38.0 2.91e-01 79.0% 74.5%
3935039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.24e-01 80.2% 56.4%
3873544 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 37.0 3.17e-01 76.5% 76.1%
4340262 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 38.0 3.26e-01 77.8% 78.5%
3710596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 2.91e-01 70.4% 42.1%
3699016 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.50 42.0 2.69e-01 96.3% 63.7%
3929202 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.50 35.0 3.25e-01 72.8% 81.0%