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phosphoprotein

Euk-Vir

Birds-foot_trefoil_nucleorhabdovirus

phosphoprotein__YP_009825046__Birds-foot_trefoil_nucleorhabdovirus__2283315

Identity

Accession:
YP_009825046 ↗
Protein ID:
phosphoprotein
Kingdom:
euk

Quality

67.0 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-101
PDB
Domain cluster: rep: putative__NP_042282__Sonchus_yellow_net_nucleorhabdovirus__11307__D21-104
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.74 51.0 5.18e-01 71.3% 87.1%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.69 46.0 4.75e-01 70.1% 72.8%
3k3fA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.66 57.0 3.93e-01 100.0% 29.8%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.64 43.0 3.86e-01 70.1% 50.4%
4ezcB00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.63 55.0 3.75e-01 100.0% 35.0%
3awmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 53.0 3.51e-01 100.0% 23.6%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 51.0 5.23e-01 100.0% 98.8%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 50.0 5.13e-01 100.0% 98.8%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.60 39.0 3.91e-01 100.0% 64.1%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 45.0 4.53e-01 85.1% 80.7%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 53.0 3.39e-01 100.0% 22.7%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 51.0 3.83e-01 100.0% 75.5%
1f16A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 54.0 4.09e-01 100.0% 67.7%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 40.0 3.47e-01 71.3% 56.2%
3ajmB02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 40.0 3.52e-01 72.4% 63.2%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 39.0 3.40e-01 71.3% 64.9%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 40.0 3.61e-01 74.7% 73.3%
6lcuA02 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.54 38.0 3.59e-01 79.3% 61.0%
3da1A03 1.10.8.870 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain 0.53 41.0 3.62e-01 85.1% 69.9%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 30.0 3.49e-01 83.9% 80.3%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 46.0 3.84e-01 100.0% 98.7%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.50 45.0 4.03e-01 100.0% 97.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519328 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.83 52.0 5.08e-01 72.4% 58.9%
1711659 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.79 50.0 5.83e-01 72.4% 90.3%
4341780 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.78 53.0 6.11e-01 75.9% 93.8%
3476825 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 57.0 4.96e-01 75.9% 93.6%
3984343 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.77 52.0 3.95e-01 70.1% 33.0%
4982784 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.76 48.0 5.63e-01 71.3% 93.3%
5053308 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.72 56.0 5.43e-01 80.5% 91.6%
3172622 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 45.0 4.82e-01 70.1% 73.3%
4591229 190.1.1.8 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.72 51.0 4.95e-01 73.6% 68.4%
4431428 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 58.0 5.70e-01 92.0% 84.2%
3289973 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.65 48.0 4.23e-01 79.3% 66.7%
3600676 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 52.0 4.81e-01 87.4% 90.0%
3691418 601.19.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF7605 0.62 47.0 3.41e-01 82.8% 62.9%
3479678 5025.1.1.0 ↗ extended segments › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex 0.61 42.0 3.17e-01 70.1% 57.6%
4994573 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.60 41.0 4.28e-01 71.3% 88.7%
4660623 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 48.0 4.75e-01 88.5% 98.9%
3621106 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 41.0 3.00e-01 71.3% 32.6%
4032037 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 47.0 4.69e-01 87.4% 100.0%
4024018 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.59 51.0 4.45e-01 95.4% 97.7%
3469758 3787.3.1.1 ↗ alpha bundles › HAD superfamily helical bundle insertion domain › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › 5_nucleotid 0.58 42.0 3.88e-01 74.7% 79.1%
4296017 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.58 40.0 3.52e-01 71.3% 75.4%
5036344 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.58 49.0 3.52e-01 90.8% 62.1%
3958231 628.1.1.0 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain 0.57 40.0 3.22e-01 74.7% 62.2%
4957171 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.55 39.0 4.43e-01 98.9% 100.0%
3325595 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 39.0 3.57e-01 75.9% 83.5%
3786072 544.1.1.3 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › PF29121 0.54 43.0 4.15e-01 87.4% 81.0%
5069733 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 43.0 3.00e-01 87.4% 93.2%
D2 high residues 226-343
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.69 32.0 3.80e-01 78.0% 62.8%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.69 36.0 4.25e-01 86.4% 72.8%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.69 34.0 3.98e-01 85.6% 67.5%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 34.0 3.63e-01 86.4% 57.1%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.63 33.0 3.54e-01 86.4% 55.2%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 32.0 3.73e-01 94.1% 74.1%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 33.0 3.67e-01 96.6% 71.9%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 42.0 3.92e-01 95.8% 63.8%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 42.0 3.93e-01 81.4% 99.3%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 37.0 4.06e-01 70.3% 97.0%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.54 37.0 3.59e-01 88.1% 63.1%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 41.0 3.78e-01 83.1% 68.4%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.52 40.0 3.96e-01 82.2% 91.9%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 36.0 3.64e-01 98.3% 72.8%
1j7nA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.51 42.0 3.45e-01 89.0% 92.8%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.51 38.0 4.03e-01 96.6% 92.0%
7ckaA01 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 42.0 3.56e-01 92.4% 66.8%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.50 32.0 3.67e-01 85.6% 88.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934927 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 34.0 3.63e-01 86.4% 59.0%
4930709 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.62 34.0 2.89e-01 86.4% 31.8%
3482686 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 31.0 3.55e-01 85.6% 63.3%
3971026 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 32.0 3.22e-01 86.4% 47.2%
3779698 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.56 42.0 3.33e-01 79.7% 72.2%
4034371 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.55 43.0 3.98e-01 96.6% 65.5%
4410511 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.54 43.0 3.79e-01 86.4% 76.7%
5051294 601.41.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein 0.54 39.0 3.83e-01 96.6% 70.4%
3219307 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.52 44.0 3.89e-01 89.0% 90.3%
4017816 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 40.0 3.77e-01 96.6% 67.9%
3930124 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.51 39.0 3.80e-01 96.6% 73.1%
3672138 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.50 38.0 3.57e-01 80.5% 81.3%