←Back to structures
photolyase
Euk-VirPenguinpox_virus
photolyase__YP_009046150__Penguinpox_virus__648998
Identity
- Accession:
- YP_009046150 ↗
- Protein ID:
- photolyase
- Kingdom:
- euk
Quality
95.7
mean pLDDT
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-183_205-213
Domain cluster:
rep: DNA_photolyase__YP_008004123__Choristoneura_biennis_entomopoxvirus__10288__D4-148
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00875.25 best | DNA_photolyase | 83.0 | 3.40e-23 | 87.3% | 87.8% |
D2
high
residues 319-463
D3
medium
residues 184-204_218-318
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3umvA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.96 | 93.0 | 8.08e-01 | 100.0% | 85.4% |
| 2e0iA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.93 | 60.0 | 6.76e-01 | 100.0% | 82.7% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.90 | 72.0 | 7.19e-01 | 100.0% | 81.3% |
| 1dnpA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.87 | 69.0 | 6.95e-01 | 100.0% | 81.3% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.87 | 68.0 | 6.97e-01 | 99.2% | 83.2% |
| 1u3dA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.85 | 76.0 | 7.31e-01 | 100.0% | 84.3% |
| 3cvvA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.80 | 68.0 | 6.61e-01 | 100.0% | 81.7% |
| 4jzyA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.75 | 67.0 | 6.40e-01 | 100.0% | 83.3% |
| 3zxsC02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 72.0 | 6.50e-01 | 100.0% | 87.0% |
| 2vj4A01 | 1.10.10.2060 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 45.0 | 5.08e-01 | 88.5% | 95.6% |
| 2jifA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 44.0 | 4.52e-01 | 88.5% | 89.8% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 42.0 | 4.32e-01 | 89.3% | 85.7% |
| 1l5jA01 | 1.25.40.310 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Aconitate B, HEAT-like domain | 0.54 | 39.0 | 3.64e-01 | 77.0% | 88.8% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 26.0 | 2.87e-01 | 97.5% | 54.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3334858 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.99 | 76.0 | 5.60e-01 | 77.9% | 37.7% |
| 3957091 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.96 | 65.0 | 4.85e-01 | 73.0% | 32.3% |
| 4378285 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.95 | 67.0 | 5.08e-01 | 76.2% | 35.2% |
| 4027389 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.94 | 73.0 | 5.47e-01 | 79.5% | 38.8% |
| 3965738 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.94 | 63.0 | 4.90e-01 | 75.4% | 36.1% |
| 4002366 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.93 | 66.0 | 5.01e-01 | 76.2% | 35.6% |
| 3284493 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.93 | 63.0 | 4.84e-01 | 75.4% | 34.7% |
| 4030829 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.92 | 65.0 | 4.83e-01 | 75.4% | 32.6% |
| 4964733 | 182.1.1.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain | 0.91 | 71.0 | 5.03e-01 | 79.5% | 33.5% |
| 4496124 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.91 | 71.0 | 5.10e-01 | 80.3% | 34.8% |
| 4937162 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.90 | 71.0 | 5.06e-01 | 80.3% | 35.4% |
| 3899996 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.90 | 67.0 | 4.66e-01 | 78.7% | 27.4% |
| 3692344 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.89 | 69.0 | 5.05e-01 | 78.7% | 38.5% |
| 4076876 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.84 | 66.0 | 4.78e-01 | 80.3% | 33.9% |
| 3604828 | 182.1.1.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 | 0.83 | 65.0 | 4.62e-01 | 80.3% | 36.8% |
| 3320550 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 47.0 | 3.94e-01 | 77.0% | 68.3% |
| 3592115 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 43.0 | 3.20e-01 | 73.0% | 39.2% |
| 3217904 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.61 | 43.0 | 3.45e-01 | 73.8% | 56.8% |
| 3709860 | 109.4.1.628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS | 0.57 | 44.0 | 3.44e-01 | 80.3% | 65.7% |
| 3997879 | 109.4.1.2567 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, IBB, PF28415 | 0.55 | 41.0 | 3.53e-01 | 78.7% | 82.0% |
| 3997586 | 101.1.1.69 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 | 0.54 | 28.0 | 2.85e-01 | 99.2% | 48.0% |
| 3643739 | 109.4.1.1275 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long, TPR_24 | 0.53 | 38.0 | 2.36e-01 | 75.4% | 21.2% |
| 3889085 | 109.4.1.651 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_2 | 0.53 | 38.0 | 2.90e-01 | 74.6% | 51.5% |
| 3840593 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.53 | 42.0 | 4.15e-01 | 87.7% | 80.0% |
| 3207454 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.52 | 39.0 | 3.17e-01 | 79.5% | 73.9% |
| 3338330 | 109.4.1.1260 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long | 0.52 | 40.0 | 2.77e-01 | 82.0% | 46.5% |
| 3640926 | 109.4.1.1274 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long | 0.50 | 37.0 | 2.68e-01 | 77.9% | 44.9% |
| 3648713 | 4120.1.1.55 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › MIP | 0.50 | 23.0 | 2.64e-01 | 99.2% | 54.7% |