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photolyase

Euk-Vir

Flamingopox_virus_FGPVKD09

photolyase__YP_009448076__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:
YP_009448076 ↗
Protein ID:
photolyase
Kingdom:
euk

Quality

95.7 mean pLDDT

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-179
PDB
Domain cluster: rep: DNA_photolyase__YP_008004123__Choristoneura_biennis_entomopoxvirus__10288__D4-148
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00875.25 best DNA_photolyase 83.6 2.20e-23 88.1% 84.2%
D2 high residues 235-317
PDB
Domain cluster: rep: putative_class_II_DNA_photolyase__YP_009052160__Aureococcus_anophagefferens_virus__1474867__D225-304
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3umvA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.99 96.0 7.23e-01 100.0% 51.5%
3zxsC02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.95 91.0 7.17e-01 100.0% 58.4%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.94 90.0 7.67e-01 100.0% 70.7%
2e0iA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.93 73.0 6.88e-01 100.0% 69.4%
1u3dA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.92 87.0 7.24e-01 100.0% 67.9%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.92 88.0 7.59e-01 100.0% 73.1%
1dnpA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.88 82.0 7.08e-01 100.0% 68.3%
3cvvA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.83 78.0 6.54e-01 100.0% 67.9%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.75 57.0 5.37e-01 88.0% 67.3%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.67 59.0 5.39e-01 98.8% 84.7%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.63 45.0 4.66e-01 74.7% 92.4%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.62 47.0 4.19e-01 80.7% 87.1%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 50.0 3.98e-01 94.0% 58.1%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 4.56e-01 89.2% 96.1%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 48.0 4.47e-01 88.0% 94.3%
5dqqA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 42.0 3.64e-01 95.2% 47.7%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.91e-01 97.6% 72.5%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 44.0 3.97e-01 86.7% 82.1%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 4.08e-01 90.4% 86.0%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 45.0 4.26e-01 90.4% 99.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.55 42.0 3.61e-01 83.1% 86.5%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.54 39.0 3.90e-01 77.1% 78.7%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 4.29e-01 90.4% 94.9%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 42.0 3.67e-01 88.0% 78.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 41.0 3.84e-01 88.0% 91.7%
3llwD00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 45.0 3.18e-01 100.0% 43.9%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 43.0 3.81e-01 97.6% 64.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3334858 182.1.1.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.99 97.0 6.40e-01 100.0% 33.2%
4027389 182.1.1.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.97 94.0 6.29e-01 100.0% 33.8%
4378285 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.96 88.0 5.98e-01 100.0% 31.6%
3957091 182.1.1.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.96 87.0 5.82e-01 100.0% 30.0%
4496124 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.93 89.0 5.79e-01 100.0% 28.5%
4030829 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.93 88.0 5.86e-01 100.0% 30.4%
5003005 182.1.1.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain 0.93 89.0 5.76e-01 100.0% 29.8%
3692344 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.92 88.0 5.84e-01 100.0% 32.7%
4076876 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.86 82.0 5.37e-01 100.0% 29.2%
3351834 182.1.1.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7 0.83 78.0 5.11e-01 100.0% 28.6%
5021069 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.65 54.0 5.02e-01 94.0% 72.1%
3509413 601.54.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 › UPF0220 0.64 47.0 4.01e-01 78.3% 83.0%
5038532 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.64 56.0 5.03e-01 98.8% 85.2%
3321734 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.61 45.0 4.05e-01 77.1% 67.0%
3328606 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.59 45.0 3.47e-01 81.9% 100.0%
4247950 4994.1.1.1 ↗ alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.59 47.0 4.55e-01 86.7% 85.3%
5028152 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 39.0 4.29e-01 81.9% 86.2%
3741291 592.1.1.6 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.59 42.0 4.33e-01 78.3% 78.8%
4995732 604.32.1.0 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.55 44.0 3.75e-01 88.0% 91.4%
4185 4002.1.1.4 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C 0.54 44.0 3.51e-01 90.4% 97.7%
4453744 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 41.0 3.75e-01 83.1% 77.3%
57616 4002.1.1.0 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.53 43.0 3.47e-01 90.4% 96.0%
3722903 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 3.18e-01 92.8% 32.5%
3999930 603.1.1.105 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.52 42.0 3.87e-01 88.0% 91.8%
4039569 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 31.0 2.78e-01 91.6% 43.3%
D3 high residues 324-463
PDB
Domain cluster: rep: DNA_photolyase_2__YP_006607781__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D255-394