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pif-1
Euk-VirSucra_jujuba_nucleopolyhedrovirus
pif-1__YP_009186820__Sucra_jujuba_nucleopolyhedrovirus__1563660
Identity
- Accession:
- YP_009186820 ↗
- Protein ID:
- pif-1
- Kingdom:
- euk
Quality
76.9
mean pLDDT
Taxonomy
TaxID: 1563660
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 418-526
Domain cluster:
rep: pif-1__YP_009552247__Malacosoma_neustria_nucleopolyhedrovirus__38012__D405-533
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 41.8 | 8.80e-11 | 100.0% | 22.6% |
D2
medium
residues 67-207
D3
medium
residues 228-335_394-417
Domain cluster:
rep: pif-1__YP_008720011__Clostera_anastomosis_granulovirus_Henan__1986291__D224-310
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 102.4 | 3.90e-29 | 98.5% | 21.6% |
D4
medium
residues 336-393
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tvkA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.57 | 43.0 | 3.54e-01 | 84.5% | 100.0% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.85e-01 | 96.6% | 75.0% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.50 | 39.0 | 3.68e-01 | 91.4% | 100.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.53 | 39.0 | 2.51e-01 | 81.0% | 58.4% | |
| 3595620 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.53 | 36.0 | 2.54e-01 | 93.1% | 20.0% |
| 5024461 | 304.28.1.38 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C | 0.52 | 43.0 | 3.24e-01 | 100.0% | 35.2% |
| 4013464 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.51 | 43.0 | 2.96e-01 | 100.0% | 47.0% |