pif-2

Euk-Vir

Esparto_virus

pif-2__YP_009551765__Esparto_virus__2072209

Identity

77.8 mean pLDDT

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Esparto_virus

TaxID: 2072209

View cluster (55 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-140

PDB

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04631.18 best	PIF2	27.1	2.80e-06	98.3%	15.0%

D2 high residues 305-381

PDB

D3 medium residues 185-245

PDB

Domain cluster: rep: pif-2__YP_009552253__Malacosoma_neustria_nucleopolyhedrovirus__38012__D183-260

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2g5gX01	3.40.50.11550	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	43.0	3.02e-01	85.2%	100.0%
2c7hA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.54	35.0	3.21e-01	85.2%	48.8%
2kmcA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.53	37.0	3.18e-01	73.8%	44.1%
3bc9A01	2.60.40.1220	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	45.0	3.98e-01	100.0%	68.8%
4dipH00	3.10.50.40	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.52	37.0	3.05e-01	78.7%	73.9%
3deeA02	3.90.930.50	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.51	33.0	2.74e-01	96.7%	35.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4939580	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.57	27.0	3.27e-01	93.4%	52.5%
3252925	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.54	37.0	3.37e-01	72.1%	60.0%
4026153	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.54	39.0	3.89e-01	78.7%	83.1%
3620613	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.53	36.0	4.00e-01	70.5%	100.0%
5079246	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.52	37.0	3.19e-01	73.8%	68.4%

D4 medium residues 246-302

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04631.18 best	PIF2	29.1	6.60e-07	100.0%	12.6%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fbyA01	2.10.25.10	Mainly Beta › Ribbon › Laminin › Laminin	0.61	40.0	4.20e-01	100.0%	78.7%
1uglA00	3.30.30.70	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Scorpion toxin-like	0.55	34.0	3.54e-01	86.0%	68.0%
2vsqA06	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.51	40.0	3.45e-01	93.0%	70.5%
6gmhK00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.50	38.0	3.20e-01	96.5%	43.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3490641	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.64	42.0	4.54e-01	94.7%	86.7%
3580086	389.1.1.100 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › cEGF, EGF_3	0.60	41.0	4.29e-01	98.2%	82.0%
3218333	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.54	42.0	4.32e-01	100.0%	96.4%
3998038	389.1.1.0 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin	0.50	36.0	3.71e-01	100.0%	87.3%