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pif-3
Euk-VirOryctes_rhinoceros_nudivirus
pif-3__YP_002321418__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321418 ↗
- Protein ID:
- pif-3
- Kingdom:
- euk
Quality
78.3
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 141-203
Domain cluster:
rep: pif-3_protein__YP_007250522__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D151-200
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05006.18 best | PIF3 | 64.1 | 2.20e-17 | 84.1% | 35.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 43.0 | 3.51e-01 | 81.0% | 82.6% |
| 2j58A01 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.59 | 40.0 | 3.40e-01 | 71.4% | 78.9% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 40.0 | 3.82e-01 | 73.0% | 94.8% |
| 4k3cA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 41.0 | 3.81e-01 | 74.6% | 90.2% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.57 | 39.0 | 4.14e-01 | 73.0% | 90.0% |
| 2y9wC00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 42.0 | 3.38e-01 | 82.5% | 86.0% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 37.0 | 3.08e-01 | 79.4% | 81.8% |
| 4a4aA02 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.50 | 35.0 | 2.96e-01 | 77.8% | 83.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4682166 | 389.6.1.1 ↗ | few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › IGFBP | 0.60 | 37.0 | 3.78e-01 | 73.0% | 62.5% |
| 5003906 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 40.0 | 3.60e-01 | 73.0% | 68.4% |
| 2875038 | 3993.1.1.1 ↗ | few secondary structure elements › C-P lyase subunit PhnJ C-terminal Zn-binding domain › C-P lyase subunit PhnJ C-terminal Zn-binding domain › C-P lyase subunit PhnJ C-terminal Zn-binding domain › PhnJ | 0.57 | 29.0 | 3.29e-01 | 73.0% | 60.9% |
| 3917008 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.53 | 42.0 | 4.03e-01 | 95.2% | 87.5% |
| 3458124 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.52 | 43.0 | 2.75e-01 | 93.7% | 92.1% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.51 | 41.0 | 3.09e-01 | 98.4% | 75.5% |
| 3433812 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.51 | 38.0 | 3.09e-01 | 84.1% | 78.5% |
D2
medium
residues 59-124
Domain cluster:
rep: PIF-3__YP_009116660__Tipula_oleracea_nudivirus__1546257__D61-124
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05006.18 best | PIF3 | 66.6 | 3.90e-18 | 100.0% | 47.0% |