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pif-3_protein

Euk-Vir

Thysanoplusia_orichalcea_nucleopolyhedrovirus

pif-3_protein__YP_007250522__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850

Identity

Accession:
YP_007250522 ↗
Protein ID:
pif-3_protein
Kingdom:
euk

Quality

79.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Thysanoplusia_orichalcea_nucleopolyhedrovirus

TaxID: 101850

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-200
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05006.18 best PIF3 64.7 1.40e-17 100.0% 33.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.02e-01 88.0% 61.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.09e-01 90.0% 31.3%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.56 42.0 3.73e-01 84.0% 70.5%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.55 43.0 3.88e-01 88.0% 88.7%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 2.65e-01 84.0% 33.9%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.55 40.0 3.20e-01 86.0% 94.3%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.54 43.0 2.68e-01 96.0% 33.4%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.53 38.0 3.79e-01 80.0% 94.3%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 42.0 3.37e-01 100.0% 82.3%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 35.0 2.92e-01 78.0% 75.9%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 38.0 3.69e-01 86.0% 91.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4468810 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.70 46.0 3.46e-01 70.0% 27.2%
3513179 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.64 48.0 4.56e-01 84.0% 68.3%
3906082 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 47.0 2.99e-01 84.0% 87.2%
3585877 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.60 40.0 2.58e-01 70.0% 38.8%
4682166 389.6.1.1 ↗ few secondary structure elements › EGF-like › Growth factor receptor domain › Growth factor receptor domain › IGFBP 0.59 43.0 4.00e-01 86.0% 62.5%
3796107 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.57 38.0 3.29e-01 72.0% 44.4%
3239359 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 44.0 2.79e-01 88.0% 36.5%
3416461 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 42.0 4.50e-01 100.0% 100.0%
2391543 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 38.0 2.56e-01 88.0% 17.8%
4438356 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.55 37.0 3.34e-01 72.0% 56.0%
4416349 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.55 36.0 3.22e-01 70.0% 52.5%
3933688 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 42.0 2.61e-01 88.0% 31.6%
3400190 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.54 45.0 3.27e-01 90.0% 49.2%
4015688 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.51e-01 88.0% 80.0%
4262988 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.53 36.0 3.12e-01 72.0% 49.4%
4981949 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.57e-01 88.0% 78.8%
3304359 304.48.1.70 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Intron_maturas2 0.53 44.0 2.56e-01 98.0% 53.9%
4959599 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 40.0 3.14e-01 88.0% 50.0%
3259162 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 35.0 2.88e-01 80.0% 46.4%
3625488 387.1.7.1 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold › Lustrin_cystein 0.51 39.0 4.06e-01 88.0% 93.3%
4811950 866.1.1.1 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › FliM 0.50 35.0 3.22e-01 88.0% 52.7%
D2 medium residues 62-131
PDB
Domain cluster: rep: PrGVORF30__YP_003429354__Artogeia_rapae_granulovirus__362830__D51-115
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05006.18 best PIF3 84.7 9.90e-24 100.0% 47.0%