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pif1

Euk-Vir

Hemileuca_sp._nucleopolyhedrovirus

pif1__YP_008378336__Hemileuca_sp._nucleopolyhedrovirus__1367203

Identity

Accession:
YP_008378336 ↗
Protein ID:
pif1
Kingdom:
euk

Quality

78.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Hemileuca_sp._nucleopolyhedrovirus

TaxID: 1367203

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-125
PDB
Domain cluster: rep: pif1__YP_009133228__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929__D70-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05092.18 best PIF 62.2 5.90e-17 100.0% 10.3%
D2 medium residues 159-207
PDB
Domain cluster: rep: PIF-1__YP_009552680__Operophtera_brumata_nucleopolyhedrovirus__1046267__D145-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05092.18 best PIF 66.8 2.40e-18 100.0% 9.0%
D3 medium residues 208-323
PDB
Domain cluster: rep: pif-1__YP_008720011__Clostera_anastomosis_granulovirus_Henan__1986291__D224-310
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05092.18 best PIF 121.6 5.70e-35 100.0% 22.2%
D4 medium residues 324-342_381-420_475-522
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3695695 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 21.0 2.42e-01 98.1% 43.8%
D5 medium residues 421-474
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.81e-01 74.1% 92.3%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.39e-01 74.1% 58.9%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.45e-01 75.9% 82.1%
4uwmA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 46.0 2.86e-01 100.0% 27.1%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 37.0 2.84e-01 75.9% 87.4%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.87e-01 77.8% 85.8%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.10e-01 74.1% 67.3%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 36.0 3.33e-01 72.2% 76.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.17e-01 72.2% 55.1%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.33e-01 74.1% 87.0%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.51 35.0 2.59e-01 72.2% 70.8%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.16e-01 74.1% 59.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.24e-01 74.1% 74.7%
1z3eA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 38.0 2.98e-01 81.5% 60.5%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.32e-01 74.1% 78.6%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.09e-01 74.1% 62.4%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.13e-01 74.1% 65.9%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.34e-01 74.1% 80.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3905735 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.59 40.0 3.51e-01 72.2% 72.9%
4929381 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.70e-01 74.1% 72.0%
3970023 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.57e-01 74.1% 66.3%
4026261 6147.1.1.2 ↗ alpha arrays › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › DBR1 0.56 41.0 2.47e-01 77.8% 28.3%
4961970 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.49e-01 72.2% 68.9%
3740394 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.09e-01 77.8% 44.5%
5022256 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.33e-01 77.8% 73.3%
3968880 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 2.97e-01 75.9% 44.0%
4251290 101.1.2.573 ↗ alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.53 37.0 3.17e-01 75.9% 55.0%
4944400 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.53e-01 77.8% 68.6%
5063747 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.14e-01 94.4% 80.6%
3404868 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 36.0 3.08e-01 74.1% 90.5%
4005246 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.53 36.0 3.41e-01 72.2% 73.8%
5022639 101.1.2.270 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF977 0.52 36.0 3.08e-01 74.1% 54.7%
3525815 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.52 35.0 3.00e-01 72.2% 66.3%
5072661 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 3.18e-01 72.2% 66.3%
3701463 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.51 36.0 3.16e-01 75.9% 67.1%
4989306 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.27e-01 72.2% 70.0%
5053119 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.90e-01 77.8% 51.7%
5064168 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.57e-01 94.4% 74.1%
5035389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.14e-01 75.9% 65.9%
4992657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.46e-01 77.8% 92.8%
3392763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.14e-01 75.9% 75.3%
4940719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 2.66e-01 75.9% 39.9%
3258284 101.1.2.288 ↗ alpha arrays › HTH › HTH › winged helix domain › Stk19 0.50 40.0 3.00e-01 94.4% 94.2%
5057413 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.50 36.0 2.87e-01 77.8% 53.6%
5074322 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.19e-01 75.9% 73.4%