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pif1
Euk-VirLambdina_fiscellaria_nucleopolyhedrovirus
pif1__YP_009133228__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929
Identity
- Accession:
- YP_009133228 ↗
- Protein ID:
- pif1
- Kingdom:
- euk
Quality
77.2
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Lambdina_fiscellaria_nucleopolyhedrovirus
TaxID: 1642929
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 257-392
Domain cluster:
rep: hypothetical_protein__YP_002300631__Adoxophyes_orana_nucleopolyhedrovirus__542343__D260-395
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 74.4 | 1.10e-20 | 100.0% | 24.5% |
D2
high
residues 417-529
Domain cluster:
rep: pif-1__YP_009552247__Malacosoma_neustria_nucleopolyhedrovirus__38012__D405-533
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 30.4 | 2.60e-07 | 100.0% | 20.5% |
D3
medium
residues 70-119
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 47.2 | 2.00e-12 | 100.0% | 8.6% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.75 | 52.0 | 3.93e-01 | 74.0% | 31.1% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 51.0 | 3.81e-01 | 74.0% | 29.6% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 46.0 | 3.20e-01 | 74.0% | 20.4% |
| 3thpA02 | 2.60.120.1520 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 54.0 | 3.90e-01 | 94.0% | 47.4% |
| 1nltA03 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.65 | 47.0 | 4.00e-01 | 78.0% | 90.2% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 43.0 | 3.32e-01 | 74.0% | 39.3% |
| 4avaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 46.0 | 3.53e-01 | 92.0% | 71.5% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 41.0 | 2.89e-01 | 76.0% | 20.2% |
| 3ffjA04 | 2.60.40.4040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 47.0 | 3.56e-01 | 90.0% | 48.0% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 45.0 | 3.13e-01 | 90.0% | 53.8% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 44.0 | 2.69e-01 | 88.0% | 45.4% |
| 2r6fA04 | 1.10.8.280 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like | 0.58 | 46.0 | 3.59e-01 | 92.0% | 75.4% |
| 4h75A00 | 2.80.10.70 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty | 0.57 | 46.0 | 3.12e-01 | 92.0% | 52.3% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 45.0 | 3.12e-01 | 92.0% | 47.8% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 3.48e-01 | 88.0% | 81.0% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 43.0 | 3.43e-01 | 92.0% | 88.2% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.55 | 43.0 | 3.41e-01 | 96.0% | 77.8% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 41.0 | 2.93e-01 | 88.0% | 31.7% |
| 4d6gA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.54 | 38.0 | 2.88e-01 | 74.0% | 31.5% |
| 2vqaC01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.13e-01 | 100.0% | 52.5% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.30e-01 | 86.0% | 74.5% |
| 3e0jA01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.52 | 40.0 | 2.53e-01 | 90.0% | 25.8% |
| 6vfqA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 40.0 | 3.26e-01 | 92.0% | 89.5% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 39.0 | 2.96e-01 | 84.0% | 89.6% |
| 5lvxC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 43.0 | 3.42e-01 | 96.0% | 89.8% |
| 3r1kA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.51 | 37.0 | 3.10e-01 | 80.0% | 83.3% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 42.0 | 3.17e-01 | 96.0% | 84.7% |
| 2di8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.29e-01 | 90.0% | 87.2% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.50 | 39.0 | 2.61e-01 | 92.0% | 78.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 52.0 | 4.59e-01 | 78.0% | 65.3% |
| 4629115 | 12.6.1.10 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › PF29200 | 0.70 | 48.0 | 4.47e-01 | 74.0% | 90.8% |
| None | — | 0.69 | 60.0 | 4.26e-01 | 100.0% | 60.7% | |
| 4161966 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.68 | 47.0 | 2.78e-01 | 72.0% | 9.8% |
| 3370568 | 4111.1.1.0 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like | 0.68 | 45.0 | 3.59e-01 | 70.0% | 68.6% |
| 3937672 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.64 | 46.0 | 3.57e-01 | 78.0% | 64.3% |
| 4954828 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.64 | 43.0 | 4.31e-01 | 96.0% | 70.0% |
| 5053740 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.63 | 51.0 | 4.03e-01 | 92.0% | 48.6% |
| 3845293 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.62 | 45.0 | 3.40e-01 | 78.0% | 59.2% |
| 3363456 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.61 | 42.0 | 3.26e-01 | 74.0% | 30.4% |
| 4066557 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.61 | 55.0 | 4.56e-01 | 100.0% | 74.1% |
| 3209753 | 10.12.1.19 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ureidogly_lyase | 0.61 | 50.0 | 3.90e-01 | 100.0% | 90.4% |
| 3717686 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.61 | 44.0 | 3.42e-01 | 78.0% | 64.9% |
| 3467072 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.61 | 41.0 | 2.86e-01 | 74.0% | 19.0% |
| 3598694 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.60 | 43.0 | 3.38e-01 | 78.0% | 65.5% |
| 4230153 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 54.0 | 4.53e-01 | 100.0% | 70.6% |
| 3820862 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.60 | 41.0 | 2.85e-01 | 74.0% | 18.5% |
| 2156522 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.60 | 47.0 | 3.50e-01 | 90.0% | 43.9% |
| 4991700 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 40.0 | 4.01e-01 | 72.0% | 72.0% |
| 4162061 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.58 | 44.0 | 3.47e-01 | 90.0% | 87.0% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.57 | 45.0 | 3.46e-01 | 88.0% | 72.0% |
| 4926970 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.57 | 48.0 | 3.50e-01 | 98.0% | 79.9% |
| 3175463 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.57 | 38.0 | 2.57e-01 | 72.0% | 24.2% |
| 3203069 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 48.0 | 2.97e-01 | 94.0% | 90.5% |
| 3491964 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 44.0 | 3.31e-01 | 88.0% | 80.8% |
| 3226400 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.56 | 37.0 | 3.16e-01 | 70.0% | 77.8% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 45.0 | 3.57e-01 | 90.0% | 81.9% |
| 4315296 | 5054.1.1.7 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA | 0.55 | 37.0 | 2.78e-01 | 90.0% | 26.9% |
| None | — | 0.55 | 41.0 | 2.86e-01 | 88.0% | 29.0% | |
| 4084495 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.54 | 43.0 | 3.41e-01 | 88.0% | 76.2% |
| 4093401 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.53 | 38.0 | 3.22e-01 | 78.0% | 87.4% |
| 3865720 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.31e-01 | 88.0% | 87.6% |
| 5002351 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 43.0 | 2.54e-01 | 90.0% | 17.9% |
| 3991745 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.52 | 43.0 | 3.62e-01 | 92.0% | 90.6% |
| 4487061 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.52 | 40.0 | 2.82e-01 | 88.0% | 55.3% |
| 3218835 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 2.89e-01 | 76.0% | 97.2% |
| 3894488 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.51 | 38.0 | 3.12e-01 | 90.0% | 42.0% |
| 4448323 | 12.1.1.30 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › LBP_C | 0.51 | 38.0 | 3.65e-01 | 82.0% | 72.4% |
D4
medium
residues 152-210
Domain cluster:
rep: PIF-1__YP_009552680__Operophtera_brumata_nucleopolyhedrovirus__1046267__D145-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05092.18 best | PIF | 74.2 | 1.30e-20 | 100.0% | 10.5% |