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pif2

Euk-Vir

Cryptophlebia_peltastica_nucleopolyhedrovirus

pif2__YP_010086983__Cryptophlebia_peltastica_nucleopolyhedrovirus__2304025

Identity

Accession:: YP_010086983 ↗
Protein ID:: pif2
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Cryptophlebia_peltastica_nucleopolyhedrovirus

TaxID: 2304025

Cluster

View cluster (55 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 106-183

PDB

Domain cluster: rep: per-os_infectivity_factor_2-like_protein__YP_001687001__Glossina_pallidipes_salivary_gland_hypertrophy_virus__379529__D39-120

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04631.18 best	PIF2	125.2	4.20e-36	100.0%	21.0%

D2 medium residues 217-277

PDB

Domain cluster: rep: pif-2__YP_009552253__Malacosoma_neustria_nucleopolyhedrovirus__38012__D183-260

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04631.18 best	PIF2	106.8	1.60e-30	100.0%	16.1%

D3 medium residues 319-375

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04631.18 best	PIF2	49.5	4.10e-13	100.0%	15.6%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4egwA01	3.30.460.20	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like	0.61	39.0	2.99e-01	98.2%	28.2%
1wtuA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.54	43.0	3.61e-01	98.2%	51.5%
2retA00	3.30.1300.30	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like	0.54	41.0	3.61e-01	100.0%	56.0%
2vr5B01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	47.0	3.48e-01	100.0%	40.9%
4bwiB02	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.53	42.0	3.12e-01	96.5%	66.5%
1qgwA00	3.90.510.10	Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain	0.53	36.0	3.35e-01	84.2%	53.9%
4oocA00	3.10.129.110	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase	0.51	42.0	2.82e-01	98.2%	32.8%
1k1gA00	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.50	37.0	3.00e-01	82.5%	64.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3237030	2.1.1.89 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term	0.65	41.0	3.25e-01	94.7%	31.3%
3483010	1129.1.1.1 ↗	a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12	0.55	37.0	3.17e-01	96.5%	41.1%
3838973	885.1.1.1 ↗	a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N	0.55	43.0	3.51e-01	96.5%	53.8%
3265459	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.53	43.0	3.58e-01	98.2%	95.7%
5062674	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	40.0	3.37e-01	96.5%	47.1%
3385480	319.3.1.3 ↗	beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494	0.52	42.0	3.32e-01	94.7%	81.5%
3601553	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.51	41.0	2.63e-01	96.5%	76.5%
3537007	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.51	41.0	2.95e-01	98.2%	59.5%
3661784	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.51	44.0	2.78e-01	100.0%	27.7%
3496098	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.51	40.0	2.97e-01	96.5%	32.9%
4086048	708.1.2.1 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP	0.50	42.0	3.07e-01	96.5%	87.9%
3248024	708.1.2.1 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP	0.50	42.0	3.06e-01	96.5%	86.8%