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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00030
Bact-Virpig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00030
Identity
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-44
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bf6A02 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.78 | 58.0 | 5.05e-01 | 95.3% | 53.0% |
| 1o12A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.70 | 49.0 | 2.97e-01 | 81.4% | 11.1% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.68 | 58.0 | 3.98e-01 | 100.0% | 53.5% |
| 2pmzA09 | 6.20.50.80 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.66 | 46.0 | 4.44e-01 | 93.0% | 63.5% |
| 5agaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 50.0 | 3.21e-01 | 83.7% | 31.1% |
| 1qhuA01 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.65 | 54.0 | 3.64e-01 | 100.0% | 31.1% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.64 | 36.0 | 2.94e-01 | 72.1% | 29.9% |
| 1g3pA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.63 | 47.0 | 3.85e-01 | 86.0% | 53.4% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.62 | 48.0 | 3.23e-01 | 90.7% | 25.1% |
| 1tolA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.61 | 46.0 | 3.83e-01 | 86.0% | 57.3% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 48.0 | 3.77e-01 | 100.0% | 58.9% |
| 3tfmA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 46.0 | 3.79e-01 | 100.0% | 92.9% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.59 | 46.0 | 2.69e-01 | 95.3% | 9.8% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.59 | 43.0 | 3.20e-01 | 81.4% | 66.4% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.58 | 45.0 | 3.95e-01 | 93.0% | 75.0% |
| 2qyvA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 41.0 | 2.62e-01 | 83.7% | 94.9% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 39.0 | 2.89e-01 | 76.7% | 32.5% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.33e-01 | 93.0% | 64.1% |
| 5gkxA00 | 3.90.1640.20 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › TON_0340 | 0.55 | 44.0 | 2.75e-01 | 90.7% | 91.5% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.54 | 44.0 | 3.45e-01 | 95.3% | 76.2% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.53 | 41.0 | 3.30e-01 | 100.0% | 77.3% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 38.0 | 2.98e-01 | 76.7% | 65.2% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 41.0 | 3.39e-01 | 100.0% | 80.4% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 39.0 | 2.79e-01 | 83.7% | 85.7% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 40.0 | 2.68e-01 | 95.3% | 32.0% |
| 6wm6A01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.52 | 41.0 | 2.68e-01 | 93.0% | 86.8% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 36.0 | 3.78e-01 | 97.7% | 100.0% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 39.0 | 2.80e-01 | 100.0% | 25.3% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 35.0 | 2.91e-01 | 72.1% | 91.4% |
| 1auiA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 39.0 | 2.41e-01 | 100.0% | 79.6% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 37.0 | 2.83e-01 | 100.0% | 96.8% |
| 3n7zA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 41.0 | 2.81e-01 | 90.7% | 55.4% |
| 4hwmA00 | 2.40.128.500 | Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein | 0.51 | 38.0 | 3.09e-01 | 100.0% | 54.7% |
| 2cntA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 2.96e-01 | 97.7% | 56.3% |
| 3eoiA00 | 3.30.450.360 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 43.0 | 3.13e-01 | 97.7% | 36.6% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 2.99e-01 | 100.0% | 75.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3199213 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.75 | 54.0 | 3.18e-01 | 79.1% | 11.4% |
| 4010839 | 65.1.1.3 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Amidohydro_1 | 0.71 | 50.0 | 3.38e-01 | 76.7% | 20.6% |
| 3445325 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 49.0 | 3.95e-01 | 76.7% | 70.2% |
| 3595371 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.66 | 46.0 | 3.52e-01 | 74.4% | 53.3% |
| 5026463 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.66 | 54.0 | 3.67e-01 | 95.3% | 33.9% |
| 3591613 | 633.23.1.23 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin | 0.63 | 52.0 | 3.54e-01 | 100.0% | 58.9% |
| 4950145 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.62 | 46.0 | 3.38e-01 | 81.4% | 52.4% |
| 3485789 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.61 | 47.0 | 3.62e-01 | 90.7% | 61.1% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 46.0 | 4.22e-01 | 88.4% | 71.7% |
| 4177976 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.60 | 46.0 | 3.59e-01 | 95.3% | 96.5% |
| 4950140 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.60 | 43.0 | 3.27e-01 | 81.4% | 52.2% |
| 5021896 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.58 | 44.0 | 3.27e-01 | 83.7% | 48.4% |
| 3472056 | 2006.1.1.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase | 0.58 | 43.0 | 3.08e-01 | 90.7% | 41.1% |
| 3310050 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.57 | 43.0 | 4.37e-01 | 100.0% | 97.5% |
| 2323730 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.56 | 41.0 | 3.08e-01 | 83.7% | 49.2% |
| 4483596 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.54 | 36.0 | 2.29e-01 | 90.7% | 12.2% |
| 5083611 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.54 | 45.0 | 2.76e-01 | 97.7% | 97.3% |
| 3281771 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.54 | 42.0 | 3.35e-01 | 100.0% | 75.5% |
| 4849749 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.54 | 37.0 | 3.25e-01 | 72.1% | 41.3% |
| 4948950 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 41.0 | 3.42e-01 | 100.0% | 85.9% |
| 4929631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 2.64e-01 | 83.7% | 53.3% |
| 3713772 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.53 | 40.0 | 3.43e-01 | 100.0% | 48.1% |
| 4996495 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 42.0 | 2.97e-01 | 97.7% | 48.8% |
| 3884605 | 219.1.1.80 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C | 0.52 | 37.0 | 2.85e-01 | 81.4% | 46.0% |
| 4547860 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 41.0 | 2.48e-01 | 90.7% | 19.0% |
| 3972260 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 40.0 | 3.21e-01 | 100.0% | 75.5% |
| 3226288 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.51 | 41.0 | 2.61e-01 | 93.0% | 21.6% |
| 3602850 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 3.37e-01 | 100.0% | 83.2% |
| 5081097 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 41.0 | 2.78e-01 | 100.0% | 86.3% |
| 5018156 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.51 | 36.0 | 2.69e-01 | 86.0% | 70.3% |
| 3408695 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.51 | 43.0 | 3.41e-01 | 100.0% | 68.4% |
| 151074 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.51 | 38.0 | 2.57e-01 | 100.0% | 19.9% |