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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00048

Bact-Vir

pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00048

Identity

Kingdom:
phage

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.77 57.0 4.30e-01 81.1% 65.9%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.74 57.0 4.60e-01 83.0% 76.8%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.67 47.0 3.76e-01 73.6% 44.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 49.0 4.02e-01 100.0% 43.0%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 45.0 3.38e-01 73.6% 73.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 50.0 4.35e-01 84.9% 60.7%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 48.0 3.85e-01 81.1% 71.3%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 48.0 3.03e-01 83.0% 36.7%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 48.0 3.64e-01 83.0% 43.8%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 47.0 3.29e-01 81.1% 49.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 51.0 4.17e-01 90.6% 58.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 50.0 4.16e-01 90.6% 54.7%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.61 50.0 3.16e-01 94.3% 79.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 3.94e-01 98.1% 100.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 44.0 3.28e-01 79.2% 77.8%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 42.0 4.08e-01 81.1% 65.6%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 50.0 3.39e-01 96.2% 41.0%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 46.0 2.66e-01 81.1% 10.2%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 41.0 3.99e-01 81.1% 65.5%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.59 47.0 2.94e-01 96.2% 52.3%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 50.0 3.28e-01 96.2% 66.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.58 41.0 2.85e-01 81.1% 24.5%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 42.0 3.86e-01 81.1% 59.4%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 43.0 3.13e-01 90.6% 68.8%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 51.0 3.57e-01 100.0% 38.8%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 3.77e-01 94.3% 70.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 42.0 3.72e-01 81.1% 87.3%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 48.0 2.95e-01 96.2% 31.6%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.68e-01 90.6% 60.8%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.56 41.0 3.02e-01 84.9% 31.3%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 43.0 3.27e-01 86.8% 89.7%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 44.0 3.63e-01 90.6% 51.9%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 42.0 3.52e-01 88.7% 56.7%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.26e-01 84.9% 40.8%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.81e-01 84.9% 93.0%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 42.0 2.78e-01 86.8% 21.3%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 48.0 3.51e-01 96.2% 72.9%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 48.0 3.41e-01 96.2% 51.0%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.54 48.0 3.81e-01 98.1% 79.8%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 45.0 3.51e-01 100.0% 94.5%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 3.26e-01 98.1% 95.7%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.52 37.0 2.55e-01 73.6% 62.2%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 46.0 3.26e-01 96.2% 61.1%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.43e-01 90.6% 57.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.08e-01 88.7% 39.8%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.50 45.0 4.00e-01 98.1% 72.0%
1t95A01 3.30.1250.10 Alpha Beta › 2-Layer Sandwich › Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; › Ribosome maturation protein SBDS, N-terminal domain 0.50 36.0 3.18e-01 77.4% 85.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3817626 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.72 54.0 3.72e-01 81.1% 32.2%
4307499 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.71 48.0 3.50e-01 71.7% 93.8%
4126066 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 49.0 3.56e-01 73.6% 95.2%
3768377 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 56.0 4.30e-01 90.6% 50.0%
4108467 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.67 51.0 4.39e-01 83.0% 58.8%
3575893 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.67 52.0 4.30e-01 84.9% 53.7%
4926892 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.67 47.0 3.63e-01 73.6% 40.9%
3559120 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.66 50.0 3.89e-01 83.0% 77.5%
3174934 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 47.0 2.94e-01 77.4% 21.9%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 51.0 3.11e-01 88.7% 14.1%
5031625 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.66 47.0 3.08e-01 75.5% 35.7%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.66 49.0 3.91e-01 81.1% 94.5%
3937984 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 47.0 3.75e-01 75.5% 56.0%
3239098 5.1.1.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › PF27563 0.65 49.0 3.67e-01 84.9% 57.9%
4440404 4325.1.1.15 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 0.65 51.0 3.88e-01 84.9% 45.0%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 49.0 3.33e-01 88.7% 22.6%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 52.0 3.16e-01 92.5% 36.7%
3462961 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.63 47.0 3.02e-01 79.2% 30.6%
4171807 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.63 52.0 3.71e-01 90.6% 92.5%
4308615 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.63 43.0 3.18e-01 86.8% 28.1%
3929846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 51.0 3.19e-01 92.5% 41.6%
3742185 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.62 45.0 2.67e-01 77.4% 10.8%
4001648 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.62 43.0 2.63e-01 84.9% 11.6%
3926352 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 48.0 3.84e-01 88.7% 53.9%
3492787 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.62 50.0 3.47e-01 88.7% 27.8%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 45.0 3.42e-01 100.0% 32.3%
3225229 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 47.0 2.99e-01 83.0% 18.4%
4467867 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.61 43.0 3.22e-01 77.4% 89.7%
3213146 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 47.0 3.82e-01 88.7% 58.2%
3933654 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 44.0 4.74e-01 81.1% 95.6%
3585171 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.59 44.0 3.85e-01 83.0% 77.6%
3258975 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 48.0 3.86e-01 88.7% 47.0%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 51.0 3.26e-01 96.2% 20.4%
2327295 6041.1.1.0 ↗ a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like 0.58 40.0 3.30e-01 73.6% 58.4%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.61e-01 81.1% 51.6%
1223841 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 45.0 3.53e-01 88.7% 45.0%
3743651 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.58 46.0 3.43e-01 96.2% 71.9%
4339297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 49.0 3.31e-01 94.3% 26.7%
2575628 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 51.0 3.66e-01 100.0% 81.7%
4953129 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 44.0 3.47e-01 86.8% 42.6%
3427602 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 45.0 2.87e-01 96.2% 42.9%
4150748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.26e-01 94.3% 66.9%
4945424 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.14e-01 83.0% 48.5%
4096365 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.55 43.0 3.15e-01 86.8% 63.3%
3414808 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 41.0 3.33e-01 88.7% 55.8%
4414202 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 40.0 2.90e-01 79.2% 31.0%
3935131 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.55 48.0 3.33e-01 96.2% 46.1%
3731602 2485.1.1.90 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C 0.54 48.0 3.45e-01 96.2% 35.9%
3222713 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 42.0 3.54e-01 90.6% 58.0%
3905730 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 41.0 3.35e-01 88.7% 61.7%
3283279 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.54 40.0 3.21e-01 88.7% 61.5%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 45.0 3.46e-01 92.5% 59.3%
1945733 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 45.0 3.25e-01 100.0% 82.0%
3927790 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 4.43e-01 84.9% 100.0%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.56e-01 81.1% 77.1%
3512945 2485.1.1.109 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26957 0.52 36.0 2.83e-01 73.6% 85.4%
3924148 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.52 46.0 3.20e-01 96.2% 63.6%
3222552 2485.1.1.90 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C 0.52 46.0 3.38e-01 96.2% 37.8%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 38.0 3.10e-01 88.7% 45.6%
3440964 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 40.0 2.62e-01 98.1% 43.8%
3235708 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 38.0 3.31e-01 90.6% 56.0%
3719371 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.51 40.0 3.25e-01 98.1% 78.4%
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 42.0 2.78e-01 98.1% 95.6%