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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00076

Bact-Vir

pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00076

Identity

Kingdom:
phage

Quality

38.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-96_343-407
PDB
D2 medium residues 105-193_303-338
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.60 36.0 3.54e-01 86.4% 52.9%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 35.0 4.12e-01 82.4% 84.5%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 32.0 3.40e-01 79.2% 58.3%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 34.0 3.91e-01 90.4% 83.9%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 30.0 3.30e-01 70.4% 68.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991745 229.1.1.1 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.61 35.0 4.12e-01 100.0% 82.4%
4944417 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.70e-01 97.6% 83.2%
D3 medium residues 194-302
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zxqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.71 44.0 3.76e-01 95.4% 38.6%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 44.0 4.52e-01 96.3% 65.1%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.69 42.0 4.13e-01 96.3% 57.0%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 41.0 4.63e-01 89.9% 81.2%
1n67A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 4.40e-01 100.0% 60.3%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 51.0 4.62e-01 100.0% 63.7%
8gsxA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 4.62e-01 100.0% 62.9%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 42.0 4.55e-01 95.4% 83.1%
1kv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.39e-01 89.0% 73.0%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.75e-01 92.7% 85.6%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.41e-01 98.2% 75.5%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.26e-01 96.3% 82.6%
1fhgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.43e-01 97.2% 80.4%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 4.33e-01 96.3% 82.1%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 53.0 4.62e-01 99.1% 66.3%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.65e-01 94.5% 84.4%
3uxfA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 53.0 4.58e-01 99.1% 66.3%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 43.0 4.08e-01 97.2% 64.4%
3r8qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 4.21e-01 96.3% 82.2%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.70e-01 94.5% 87.0%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.70e-01 97.2% 87.0%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.53e-01 92.7% 85.2%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.06e-01 100.0% 73.6%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.25e-01 94.5% 88.5%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 4.38e-01 92.7% 90.2%
2fboJ02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.63e-01 97.2% 86.7%
4qycB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.49e-01 92.7% 88.9%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 39.0 3.55e-01 73.4% 97.4%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 4.35e-01 100.0% 81.4%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 4.26e-01 92.7% 87.5%
5k3xA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.95e-01 98.2% 73.5%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.45e-01 96.3% 87.0%
4tshB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.59e-01 98.2% 52.6%
4g0bA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 3.47e-01 85.3% 67.8%
6lpwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 3.53e-01 85.3% 74.9%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.82e-01 94.5% 72.4%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 42.0 4.14e-01 93.6% 78.2%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 32.0 3.81e-01 86.2% 93.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.38e-01 84.4% 70.6%
3mjgX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.74e-01 97.2% 83.7%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 4.37e-01 95.4% 90.1%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 4.06e-01 93.6% 77.0%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.86e-01 100.0% 77.0%
1vknA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 3.38e-01 79.8% 90.3%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 34.0 3.59e-01 88.1% 75.0%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 45.0 4.27e-01 99.1% 98.5%
2p17A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 37.0 2.92e-01 100.0% 33.9%
2ozpA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 3.35e-01 79.8% 90.4%
1tyjA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.73e-01 98.2% 60.6%
8dqoB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 39.0 3.35e-01 85.3% 72.3%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 45.0 4.21e-01 99.1% 94.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3495353 221.13.1.1 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › DUF4140 0.70 48.0 4.40e-01 98.2% 54.3%
5025598 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 50.0 4.73e-01 93.6% 66.9%
3953953 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 42.0 4.58e-01 93.6% 78.9%
5052643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 43.0 4.17e-01 100.0% 62.4%
3900074 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 4.83e-01 90.8% 83.8%
3244602 11.1.1.889 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 0.61 39.0 4.44e-01 89.9% 87.5%
3907901 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.61 43.0 4.39e-01 94.5% 75.2%
1165730 10.20.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N_2 0.60 42.0 4.34e-01 99.1% 77.2%
3910743 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 40.0 4.30e-01 97.2% 83.3%
3850950 11.1.1.143 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Receptor_2B4 0.59 48.0 4.55e-01 98.2% 73.1%
4993130 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.59 34.0 4.07e-01 81.7% 84.0%
3873369 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 45.0 4.91e-01 91.7% 100.0%
4335811 11.1.5.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.59 53.0 4.58e-01 99.1% 64.2%
3887308 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 46.0 4.68e-01 97.2% 86.7%
3909738 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.59 47.0 4.82e-01 92.7% 90.5%
3403952 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.52e-01 99.1% 86.0%
3391588 4182.1.1.5 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › MBF2 0.58 41.0 4.48e-01 95.4% 88.8%
4995807 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 5.15e-01 93.6% 100.0%
3580755 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 52.0 4.72e-01 100.0% 97.3%
4935248 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.50e-01 96.3% 79.3%
3993913 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 4.16e-01 99.1% 67.1%
3569981 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 4.08e-01 95.4% 81.1%
3892889 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 45.0 4.47e-01 95.4% 83.5%
3257463 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.22e-01 95.4% 85.3%
5047474 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 44.0 4.68e-01 96.3% 97.9%
5061276 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 4.04e-01 97.2% 85.6%
3870463 11.1.1.852 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.54 46.0 3.85e-01 100.0% 52.8%
3606655 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.14e-01 96.3% 82.9%
3701664 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 35.0 3.76e-01 93.6% 80.0%
5033249 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.43e-01 96.3% 85.4%
3668166 323.1.1.7 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.53 42.0 3.40e-01 84.4% 68.1%
4623622 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 41.0 4.37e-01 100.0% 96.8%
3976897 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 44.0 4.21e-01 99.1% 79.2%
3968519 319.3.1.1 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.53 37.0 3.74e-01 94.5% 72.7%
5040615 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.52 47.0 4.53e-01 100.0% 97.6%
4287328 10.30.1.1 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain › Gal_Lectin 0.52 44.0 4.54e-01 98.2% 100.0%
4946055 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 45.0 4.57e-01 98.2% 97.1%
3878403 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 42.0 3.03e-01 87.2% 36.1%
3577173 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 39.0 3.98e-01 100.0% 83.8%
3733734 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.65e-01 98.2% 56.0%
5055040 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.51 41.0 4.38e-01 93.6% 100.0%
5064648 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 4.34e-01 99.1% 98.0%
4557440 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 43.0 4.39e-01 98.2% 94.3%
4256349 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.96e-01 94.5% 98.8%
3862309 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.51 43.0 3.62e-01 98.2% 55.0%
3925072 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 4.37e-01 95.4% 100.0%
3489254 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 46.0 3.87e-01 100.0% 68.6%
5039565 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 45.0 4.24e-01 98.2% 98.5%
3432142 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.51 45.0 3.59e-01 99.1% 56.8%
3413879 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.50 41.0 4.25e-01 98.2% 94.3%
3831061 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.50 43.0 3.61e-01 97.2% 87.0%