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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00087

Bact-Vir

pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00087

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-96
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 29.9 7.50e-07 95.3% 92.3%
PF19835.7 SegE_GIY-YIG 26.5 9.20e-06 76.7% 42.3%
D2 high residues 152-201
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 80.0 7.12e-01 100.0% 76.5%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 42.0 3.65e-01 100.0% 41.3%
1tbrR01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 45.0 4.49e-01 100.0% 68.6%
4tn3A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 41.0 4.40e-01 100.0% 77.5%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 43.0 3.87e-01 72.0% 95.8%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 51.0 4.07e-01 92.0% 54.4%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 51.0 4.30e-01 92.0% 67.9%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 40.0 4.07e-01 100.0% 68.6%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 44.0 4.61e-01 98.0% 88.9%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 46.0 3.71e-01 100.0% 43.8%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 45.0 3.64e-01 100.0% 43.8%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.79e-01 100.0% 81.0%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 38.0 3.16e-01 100.0% 39.6%
4zosB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 50.0 3.95e-01 98.0% 96.9%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.17e-01 100.0% 41.4%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 36.0 3.69e-01 100.0% 70.8%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.55 39.0 4.03e-01 78.0% 95.8%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.23e-01 100.0% 74.7%
7xoiP01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 37.0 3.23e-01 100.0% 46.8%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.53 37.0 3.60e-01 100.0% 65.0%
2fsuA00 3.40.50.11310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH 0.51 44.0 3.06e-01 100.0% 34.1%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 33.0 3.26e-01 92.0% 59.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.87 80.0 7.08e-01 100.0% 75.4%
4384880 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.86 78.0 6.47e-01 100.0% 63.5%
1030873 101.1.14.1 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd 0.84 65.0 6.00e-01 100.0% 66.7%
3058113 101.1.14.0 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.83 74.0 7.30e-01 100.0% 94.2%
4414927 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.80 71.0 6.38e-01 100.0% 81.2%
5028456 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 56.0 4.78e-01 86.0% 53.8%
3536989 386.1.1.333 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_5th 0.69 43.0 4.84e-01 94.0% 91.4%
3573611 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 38.0 4.59e-01 96.0% 93.3%
3480425 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 39.0 4.34e-01 98.0% 82.9%
3750234 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 46.0 4.83e-01 100.0% 91.1%
3886999 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.62 45.0 4.85e-01 98.0% 100.0%
5071905 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.62 40.0 3.41e-01 100.0% 40.0%
5065494 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 45.0 4.60e-01 100.0% 80.0%
4988977 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 46.0 4.89e-01 100.0% 97.7%
222312 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 44.0 4.61e-01 98.0% 88.9%
3375922 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.60 43.0 3.42e-01 78.0% 42.9%
3675525 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 43.0 3.93e-01 98.0% 58.8%
3617484 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 40.0 3.95e-01 96.0% 67.3%
3254172 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.57 47.0 3.15e-01 100.0% 47.0%
3874708 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 38.0 4.18e-01 90.0% 89.5%
3531184 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.56 41.0 3.51e-01 98.0% 47.1%
3411266 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 47.0 4.07e-01 96.0% 96.2%
3408086 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 42.0 4.36e-01 100.0% 95.6%
3872182 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.53 46.0 4.21e-01 98.0% 93.8%
3751772 386.1.1.297 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZFHX3 0.52 46.0 3.63e-01 100.0% 63.8%
4014325 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.57e-01 98.0% 60.0%
3523490 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 46.0 3.93e-01 100.0% 83.7%
3637145 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.52 39.0 3.33e-01 98.0% 47.8%
3737858 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 38.0 3.68e-01 100.0% 71.7%
4331385 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 3.85e-01 100.0% 85.7%
3635936 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.50 41.0 3.57e-01 98.0% 91.8%
D3 high residues 209-275
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 43.0 4.24e-01 94.0% 60.0%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 4.47e-01 71.6% 85.2%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 42.0 4.44e-01 97.0% 78.7%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 45.0 4.01e-01 94.0% 57.1%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.27e-01 71.6% 87.3%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 40.0 4.11e-01 91.0% 70.8%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 42.0 4.46e-01 85.1% 83.3%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 4.29e-01 85.1% 70.7%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 4.59e-01 85.1% 84.1%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 3.70e-01 76.1% 50.0%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 45.0 4.30e-01 82.1% 85.7%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 42.0 3.99e-01 94.0% 64.2%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.09e-01 79.1% 82.7%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 43.0 4.28e-01 88.1% 77.1%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 44.0 4.44e-01 88.1% 83.3%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.40e-01 74.6% 96.2%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 43.0 4.23e-01 88.1% 78.6%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 43.0 4.09e-01 94.0% 70.9%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 42.0 4.22e-01 86.6% 79.4%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.55 39.0 4.06e-01 91.0% 80.3%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 42.0 3.82e-01 95.5% 61.3%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 44.0 3.97e-01 92.5% 69.9%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.61e-01 79.1% 72.9%
5yc9B01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.52 39.0 3.50e-01 82.1% 81.4%
2phnA02 3.90.1660.10 Alpha Beta › Alpha-Beta Complex › CofE-like fold › CofE-like domain 0.52 36.0 3.26e-01 73.1% 84.9%
4f78A01 3.30.200.180 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.51 39.0 3.48e-01 86.6% 95.2%
2wusS00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 40.0 3.77e-01 92.5% 69.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4414927 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.85 59.0 5.86e-01 71.6% 75.4%
3171408 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 55.0 6.22e-01 71.6% 100.0%
3942056 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.68 41.0 4.86e-01 82.1% 91.1%
4155056 101.1.14.0 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.65 58.0 5.50e-01 100.0% 95.0%
5057414 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 44.0 4.38e-01 88.1% 71.4%
4994828 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.62 41.0 4.12e-01 89.6% 65.7%
5011493 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.60 46.0 4.10e-01 82.1% 62.1%
3958941 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.60 42.0 3.96e-01 82.1% 61.3%
5057975 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 43.0 4.19e-01 85.1% 68.0%
4979598 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.57 43.0 4.26e-01 88.1% 75.7%
3589930 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.57 43.0 4.19e-01 95.5% 73.3%
5010377 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.56 45.0 4.44e-01 88.1% 81.4%
4968599 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 43.0 4.14e-01 88.1% 72.0%
4087721 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 41.0 4.17e-01 88.1% 78.5%
3587398 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 44.0 4.64e-01 95.5% 95.0%
4173167 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 44.0 4.49e-01 85.1% 90.8%
4597624 3601.1.1.1 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.54 38.0 2.84e-01 73.1% 76.9%
5066994 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.54 44.0 4.12e-01 86.6% 80.0%
4968600 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.53 47.0 4.12e-01 100.0% 66.0%
D4 high residues 285-329
PDB