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pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00131

Bact-Vir

pig_ID_2229_F59_scaffold_2_curated_prodigal-single.1__X__X__00131

Identity

Kingdom:
phage

Quality

90.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-86
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.81 70.0 6.54e-01 100.0% 76.5%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.58 40.0 3.98e-01 100.0% 68.2%
6iq1A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 40.0 3.42e-01 75.6% 68.5%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 41.0 3.35e-01 76.8% 62.4%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 48.0 4.72e-01 96.3% 92.1%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.20e-01 98.8% 93.0%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.77e-01 89.0% 68.5%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 40.0 3.46e-01 81.7% 67.4%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 42.0 3.02e-01 93.9% 79.5%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.31e-01 70.7% 57.1%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 41.0 2.90e-01 93.9% 81.8%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 36.0 2.74e-01 76.8% 32.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4260807 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 66.0 7.07e-01 80.5% 100.0%
4680318 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.84 74.0 7.15e-01 100.0% 86.7%
3772921 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 67.0 6.26e-01 85.4% 80.0%
3274279 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 69.0 6.84e-01 87.8% 91.8%
4539347 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.83 73.0 6.81e-01 100.0% 79.0%
4166935 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.81 72.0 6.71e-01 100.0% 79.0%
8015 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.81 70.0 6.54e-01 100.0% 76.5%
4023805 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 70.0 6.94e-01 100.0% 96.5%
4940785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 65.0 5.85e-01 100.0% 83.5%
3412674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 57.0 5.60e-01 85.4% 93.3%
3928378 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 53.0 5.33e-01 79.3% 75.3%
3056107 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 65.0 5.96e-01 97.6% 77.1%
4639076 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 58.0 5.58e-01 100.0% 77.9%
4995759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 61.0 6.17e-01 96.3% 100.0%
3738591 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 48.0 4.08e-01 81.7% 75.0%
3782875 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 48.0 4.01e-01 86.6% 91.3%
3403338 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.59 38.0 3.99e-01 76.8% 72.0%
3783089 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 44.0 3.94e-01 81.7% 93.3%
3438045 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.58 36.0 3.92e-01 81.7% 78.5%
3403609 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.57 46.0 4.75e-01 98.8% 93.7%
3608988 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.56 42.0 4.09e-01 81.7% 93.7%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.56 46.0 4.75e-01 100.0% 98.7%
3365178 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 34.0 3.72e-01 81.7% 76.9%
4023469 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 47.0 3.98e-01 96.3% 72.1%
4980247 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.54 47.0 3.04e-01 100.0% 87.0%
3192117 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.54 44.0 3.03e-01 97.6% 89.3%
3339170 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.53 44.0 3.08e-01 98.8% 83.3%
3460976 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 40.0 2.72e-01 82.9% 52.5%
3301833 5.1.3.137 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.52 43.0 2.99e-01 98.8% 84.7%
3938256 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.52 45.0 3.50e-01 100.0% 62.1%
4193681 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.51 39.0 3.65e-01 97.6% 67.7%
4497161 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.50 42.0 2.98e-01 97.6% 92.4%
3410022 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.50 40.0 3.18e-01 87.8% 75.4%
D2 medium residues 92-201
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.71 59.0 5.63e-01 87.3% 100.0%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.68 58.0 5.39e-01 90.9% 97.8%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.67 57.0 5.41e-01 90.0% 99.2%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 27.0 3.50e-01 70.9% 86.0%
1wxxA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 25.0 3.04e-01 70.9% 69.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995760 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.78 52.0 6.19e-01 72.7% 100.0%
3948312 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.70 57.0 6.02e-01 86.4% 99.0%
3387388 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.70 56.0 5.41e-01 85.5% 100.0%
4588732 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.68 57.0 5.32e-01 90.0% 100.0%
4043621 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.68 59.0 5.35e-01 93.6% 100.0%
3896126 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.66 55.0 5.77e-01 92.7% 99.0%
5003469 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.66 57.0 5.23e-01 92.7% 100.0%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.62 48.0 5.15e-01 84.5% 96.8%
3289949 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 35.0 3.57e-01 80.9% 65.7%
3654105 292.1.1.1 a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.54 33.0 2.55e-01 70.0% 25.9%
4397331 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 40.0 3.52e-01 78.2% 98.2%
D3 medium residues 202-327
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13155.13 best Toprim_2 35.7 1.30e-08 71.4% 98.9%
CATH (81)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vazA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.82 73.0 7.27e-01 93.7% 97.7%
1t6t200 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.77 56.0 6.01e-01 76.2% 86.4%
4cgyA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 59.0 5.24e-01 87.3% 92.6%
2iu4A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.69 59.0 5.33e-01 92.1% 87.1%
2bfdB02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 57.0 5.76e-01 91.3% 100.0%
3pdiB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.67 55.0 5.31e-01 88.1% 86.9%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 53.0 4.22e-01 84.1% 94.5%
3k9gA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 53.0 4.35e-01 87.3% 99.1%
3kjhA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 52.0 4.15e-01 86.5% 99.2%
3u7qB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.64 53.0 5.10e-01 89.7% 87.7%
2fsxA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.64 49.0 4.82e-01 80.2% 84.1%
2a35A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 53.0 4.50e-01 90.5% 92.8%
3aonB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.63 44.0 4.84e-01 90.5% 91.0%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 47.0 4.61e-01 79.4% 97.1%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 52.0 4.38e-01 92.9% 67.9%
4ogzA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 51.0 3.89e-01 91.3% 68.6%
1mdbA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 44.0 4.11e-01 84.9% 60.8%
1a2oA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 49.0 4.84e-01 88.1% 97.7%
2o3jB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 51.0 4.30e-01 92.9% 97.6%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.59 50.0 4.63e-01 92.9% 99.4%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 4.19e-01 88.9% 80.0%
4u63A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 4.04e-01 80.2% 73.6%
1knxA01 3.40.1390.20 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › HprK N-terminal domain-like 0.59 41.0 4.09e-01 87.3% 68.4%
1u3dA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 4.11e-01 79.4% 80.7%
3cc1B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 50.0 3.67e-01 91.3% 69.1%
1zlpA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.58 49.0 3.76e-01 90.5% 60.2%
5ck3F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 4.29e-01 81.7% 97.3%
1gteB05 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 48.0 3.61e-01 88.9% 81.4%
3i45A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 49.0 4.39e-01 92.9% 76.1%
1jcjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 47.0 3.82e-01 89.7% 84.9%
1u8xX01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 44.0 4.04e-01 81.0% 81.9%
4xr9B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 50.0 4.19e-01 94.4% 93.4%
5aj3K00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.57 42.0 4.10e-01 76.2% 77.2%
3qxbA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 48.0 3.65e-01 91.3% 58.9%
3op2A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 43.0 3.44e-01 98.4% 40.7%
8g3hA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.57 47.0 3.60e-01 90.5% 64.6%
2r8wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 45.0 3.43e-01 84.9% 50.2%
3oa3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 47.0 3.78e-01 90.5% 65.2%
3v97B04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 4.00e-01 88.9% 77.6%
4ov4A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 3.67e-01 91.3% 65.8%
1npdB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 4.32e-01 87.3% 79.2%
2y0cB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 47.0 4.09e-01 93.7% 99.0%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 3.50e-01 90.5% 63.1%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.53e-01 88.9% 84.8%
4ru1A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 47.0 4.58e-01 93.7% 96.4%
4bfaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 47.0 3.75e-01 92.1% 73.4%
2zadA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 46.0 3.76e-01 90.5% 76.5%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 4.16e-01 89.7% 90.3%
3eucA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 47.0 3.98e-01 93.7% 77.8%
1qwgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 3.68e-01 91.3% 70.1%
1m3uA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 45.0 3.59e-01 97.6% 43.9%
3vpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 4.39e-01 90.5% 92.2%
3o4fH02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.89e-01 95.2% 88.1%
3ejfA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.54 44.0 4.09e-01 90.5% 83.7%
1wznA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.87e-01 88.9% 77.1%
2c13A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 48.0 3.56e-01 100.0% 51.1%
3kw3A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.53 43.0 3.64e-01 92.9% 51.4%
1h7nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 48.0 3.54e-01 100.0% 49.7%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 3.37e-01 90.5% 55.7%
1lsuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 46.0 4.56e-01 93.7% 89.6%
3s5nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 3.38e-01 90.5% 63.4%
3hlkB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 3.41e-01 88.9% 72.0%
4xs5B00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.53 42.0 4.38e-01 92.1% 93.0%
3wy7A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 45.0 3.73e-01 94.4% 71.1%
4k3zA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 44.0 3.36e-01 91.3% 60.3%
3qz6A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.53 43.0 3.47e-01 89.7% 81.9%
3igfA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.41e-01 88.1% 99.6%
1lt7B00 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.52 47.0 3.54e-01 100.0% 57.5%
3eegB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.59e-01 96.0% 57.0%
2hzgA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 43.0 3.52e-01 91.3% 73.8%
4qtpD00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.52 41.0 4.31e-01 91.3% 93.0%
2b7nA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 37.0 3.54e-01 93.7% 63.0%
7pd2B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 47.0 3.35e-01 97.6% 42.9%
2qezE03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 45.0 3.44e-01 94.4% 50.9%
3vk5B00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.52 43.0 3.49e-01 91.3% 60.7%
3rpdA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.51 46.0 3.38e-01 99.2% 54.5%
1b5tA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.51 46.0 3.57e-01 98.4% 62.9%
3cuxA01 3.20.20.360 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 0.51 47.0 3.31e-01 100.0% 90.5%
4c4aA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 3.94e-01 86.5% 77.8%
3d0cB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 42.0 3.22e-01 90.5% 57.7%
3vbcA00 3.40.50.11530 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 3.94e-01 84.9% 91.9%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4426393 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.84 75.0 7.49e-01 93.7% 95.4%
4041525 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.83 72.0 7.37e-01 90.5% 97.5%
4441825 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.82 71.0 7.16e-01 91.3% 96.0%
4995761 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.81 65.0 6.98e-01 91.3% 96.4%
4348029 2006.1.3.26 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3854 0.81 73.0 5.80e-01 96.0% 71.7%
4967569 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.78 61.0 6.14e-01 80.2% 84.0%
4941473 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.77 58.0 5.90e-01 78.6% 80.0%
4975817 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.77 57.0 5.61e-01 77.0% 73.3%
9923 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 55.0 5.96e-01 75.4% 87.0%
3593805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 4.54e-01 94.4% 82.6%
1144578 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 59.0 5.24e-01 86.5% 92.6%
4989980 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.69 56.0 4.17e-01 86.5% 96.7%
4180222 2004.1.1.235 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VirC1 0.69 55.0 4.51e-01 85.7% 99.1%
3839773 7604.1.1.1 a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.68 56.0 5.15e-01 86.5% 92.5%
4283078 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.68 59.0 5.46e-01 92.1% 99.4%
None 0.68 55.0 4.37e-01 84.9% 98.8%
None 0.68 58.0 4.61e-01 94.4% 100.0%
4038962 7522.1.1.1 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › Transketolase_C 0.67 57.0 5.46e-01 91.3% 87.6%
4028297 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.66 55.0 3.94e-01 88.9% 66.6%
376500 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.66 54.0 4.39e-01 86.5% 98.3%
4248027 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.66 55.0 4.04e-01 90.5% 90.0%
3188044 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.65 56.0 4.20e-01 93.7% 85.1%
3688311 2003.1.1.122 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDR 0.65 55.0 4.31e-01 91.3% 92.1%
4932886 7522.1.1.6 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.65 54.0 5.53e-01 89.7% 100.0%
3186462 2003.1.1.148 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR 0.64 55.0 4.15e-01 93.7% 89.5%
4489261 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.64 53.0 4.80e-01 88.9% 74.1%
4466206 2006.1.3.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.64 56.0 5.65e-01 95.2% 92.8%
4025815 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.64 54.0 4.10e-01 93.7% 79.9%
3972083 7592.1.1.9 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › RtcR 0.63 48.0 4.33e-01 83.3% 59.4%
4936813 7604.1.1.0 a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit 0.63 49.0 5.28e-01 86.5% 99.0%
4038287 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.63 50.0 4.89e-01 84.1% 98.5%
4598878 7582.1.1.2 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.63 54.0 4.90e-01 93.7% 99.4%
4999083 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.63 51.0 4.90e-01 87.3% 89.6%
3590242 2007.24.1.1 a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F 0.62 44.0 4.74e-01 90.5% 88.3%
4605974 7579.1.1.18 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 0.62 52.0 4.31e-01 92.9% 97.0%
3396551 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.61 50.0 3.74e-01 88.9% 53.8%
3285377 2003.1.1.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.60 49.0 3.84e-01 88.1% 66.9%
3477041 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.60 49.0 4.73e-01 92.9% 75.9%
5064873 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 50.0 3.79e-01 100.0% 39.6%
166834 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.59 49.0 4.26e-01 88.9% 79.4%
5003557 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.59 48.0 4.16e-01 87.3% 62.6%
4060880 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.59 49.0 3.93e-01 90.5% 73.6%
3601510 2003.1.5.76 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCIF1_WW 0.58 48.0 3.86e-01 88.9% 67.7%
3737792 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.58 47.0 4.55e-01 88.1% 90.3%
3638719 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.58 48.0 4.39e-01 91.3% 81.2%
3270813 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.58 49.0 4.58e-01 92.1% 90.9%
1870477 2003.1.1.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › HcgC 0.58 47.0 3.76e-01 88.9% 84.6%
4322569 2003.1.1.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.57 49.0 3.71e-01 94.4% 82.5%
3184304 2003.1.5.52 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_PK 0.57 48.0 3.82e-01 90.5% 69.9%
4950650 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.57 45.0 3.68e-01 85.7% 45.8%
1734786 2002.1.1.76 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.56 47.0 3.79e-01 90.5% 73.2%
3164257 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.56 45.0 3.47e-01 85.7% 72.8%
4991041 2007.1.11.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.56 45.0 4.60e-01 86.5% 95.0%
4672257 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 46.0 3.80e-01 88.9% 68.9%
4669171 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.55 47.0 3.75e-01 92.9% 78.0%
4934020 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.55 45.0 3.58e-01 88.9% 75.5%
3739997 2002.1.1.189 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM 0.55 46.0 3.62e-01 90.5% 77.0%
4989604 2003.1.1.54 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › HcgC 0.55 44.0 3.68e-01 88.1% 93.2%
3976992 2002.1.1.300 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, C-C_Bond_Lyase 0.54 44.0 3.44e-01 88.9% 70.5%
4965343 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.54 46.0 3.24e-01 91.3% 43.0%
3165638 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.54 45.0 3.76e-01 90.5% 82.2%
3784277 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.54 45.0 3.62e-01 90.5% 73.2%
4605530 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.54 47.0 3.54e-01 95.2% 51.3%
3610621 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 43.0 3.21e-01 88.1% 64.3%
4677393 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.53 44.0 3.66e-01 90.5% 80.4%
8769 2002.1.1.24 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ALAD 0.53 48.0 3.54e-01 100.0% 49.7%
5081499 2002.1.1.74 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.53 45.0 3.35e-01 92.9% 65.5%
5037417 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.53 45.0 3.39e-01 92.1% 60.3%
1005149 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.53 44.0 3.36e-01 91.3% 60.3%
4972819 2002.1.1.74 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.52 44.0 3.33e-01 92.9% 67.3%
4957359 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 43.0 3.37e-01 96.8% 42.6%
3695206 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.52 42.0 3.03e-01 89.7% 72.6%
4971176 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 47.0 3.56e-01 100.0% 45.7%
144464 2002.1.1.74 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.51 46.0 3.38e-01 99.2% 54.5%
3416389 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 42.0 3.28e-01 89.7% 61.7%
3490345 2002.1.1.76 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.51 45.0 3.38e-01 96.0% 45.4%
3279675 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.51 41.0 4.33e-01 90.5% 98.2%
5014091 2002.1.1.447 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5981 0.51 46.0 3.38e-01 100.0% 97.1%
3284133 2496.1.1.2 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.51 41.0 4.26e-01 90.5% 93.9%
4281432 2008.1.1.149 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 0.51 40.0 3.99e-01 85.7% 92.6%
3456739 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 4.11e-01 94.4% 88.0%
1242108 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.50 43.0 3.38e-01 93.7% 48.5%
3391173 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.50 44.0 4.19e-01 98.4% 95.3%